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Genomic databases

Investigation of mutations in the HBB gene using the 1,000 genomes database

Tânia Carlice-dos-Reis, Jaime Viana, Fabiano Cordeiro Moreira, Greice de Lemos Cardoso, João Guerreiro, Sidney Santos, Ândrea Ribeiro-dos-Santos

published 05 Apr 2017

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DNApod: DNA polymorphism annotation database from next-generation sequence read archives

Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Tazro Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura

published 24 Feb 2017

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Draft genome sequence of Karnal bunt pathogen (Tilletia indica) of wheat provides insights into the pathogenic mechanisms of quarantined fungus

Anil Kumar, Vishakha Pandey, Manoj Singh, Dinesh Pandey, M. S. Saharan, Soma S. Marla

published 02 Feb 2017

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Integrative Variation Analysis Reveals that a Complex Genotype May Specify Phenotype in Siblings with Syndromic Autism Spectrum Disorder

Viviane Neri de Souza Reis, João Paulo Kitajima, Ana Carolina Tahira, Ana Cecília Feio-dos-Santos, Rodrigo Ambrósio Fock, Bianca Cristina Garcia Lisboa, Sérgio Nery Simões, Ana C. V. Krepischi, Carla Rosenberg, Naila Cristina Lourenço, Maria Rita Passos-Bueno, Helena Brentani

published 24 Jan 2017

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Rare Synaptogenesis-Impairing Mutations in SLITRK5 Are Associated with Obsessive Compulsive Disorder

Minseok Song, Carol A. Mathews, S. Evelyn Stewart, Sergey V. Shmelkov, Jason G. Mezey, Juan L. Rodriguez-Flores, Steven A. Rasmussen, Jennifer C. Britton, Yong-Seok Oh, John T. Walkup, Francis S. Lee, Charles E. Glatt

published 13 Jan 2017

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche

published 04 Jan 2017

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A New Genetic Diagnostic for Enlarged Vestibular Aqueduct Based on Next-Generation Sequencing

Yalan Liu, Lili Wang, Yong Feng, Chufeng He, Deyuan Liu, Xinzhang Cai, Lu Jiang, Hongsheng Chen, Chang Liu, Hong Wu, Lingyun Mei

published 20 Dec 2016

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PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)

Gökhan Karakülah, Kuaybe Yücebilgili Kurtoğlu, Turgay Unver

published 09 Dec 2016

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Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides ritzemabosi (Aphelenchida: Aphelenchoididae)

Yu Xiang, Dong-Wei Wang, Jun-Yi Li, Hui Xie, Chun-Ling Xu, Yu Li

published 22 Nov 2016

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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

James B. Pettengill, Arthur W. Pightling, Joseph D. Baugher, Hugh Rand, Errol Strain

published 10 Nov 2016

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Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, Brian L. Schmidt, Donna G. Albertson, Neil J. Poloso, Karim Dabbagh, Todd Z. DeSantis

published 07 Nov 2016

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Use of Combined MSAP and NGS Techniques to Identify Differentially Methylated Regions in Somaclones: A Case Study of Two Stable Somatic Wheat Mutants

Miroslav Baránek, Jana Čechová, Tamas Kovacs, Aleš Eichmeier, Shunli Wang, Jana Raddová, Tomáš Nečas, Xingguo Ye

published 28 Oct 2016

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TheSNPpit—A High Performance Database System for Managing Large Scale SNP Data

Eildert Groeneveld, Helmut Lichtenberg

published 25 Oct 2016

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