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Genomic databases

EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes

Pumipat Tongyoo, Yingyos Avihingsanon, Santhitham Prom-On, Apiwat Mutirangura, Wuttichai Mhuantong, Nattiya Hirankarn

published 04 May 2017

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén

published 03 May 2017

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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

Benjamin C. Hitz, Laurence D. Rowe, Nikhil R. Podduturi, David I. Glick, Ulugbek K. Baymuradov, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Idan Gabdank, Aditi K. Narayana, Kathrina C. Onate, Jason Hilton, Marcus C. Ho, Brian T. Lee, Stuart R. Miyasato, Timothy R. Dreszer, Cricket A. Sloan, J. Seth Strattan, Forrest Y. Tanaka, Eurie L. Hong, J. Michael Cherry

published 12 Apr 2017

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Investigation of mutations in the HBB gene using the 1,000 genomes database

Tânia Carlice-dos-Reis, Jaime Viana, Fabiano Cordeiro Moreira, Greice de Lemos Cardoso, João Guerreiro, Sidney Santos, Ândrea Ribeiro-dos-Santos

published 05 Apr 2017

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DNApod: DNA polymorphism annotation database from next-generation sequence read archives

Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Tazro Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura

published 24 Feb 2017

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Draft genome sequence of Karnal bunt pathogen (Tilletia indica) of wheat provides insights into the pathogenic mechanisms of quarantined fungus

Anil Kumar, Vishakha Pandey, Manoj Singh, Dinesh Pandey, M. S. Saharan, Soma S. Marla

published 02 Feb 2017

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Integrative Variation Analysis Reveals that a Complex Genotype May Specify Phenotype in Siblings with Syndromic Autism Spectrum Disorder

Viviane Neri de Souza Reis, João Paulo Kitajima, Ana Carolina Tahira, Ana Cecília Feio-dos-Santos, Rodrigo Ambrósio Fock, Bianca Cristina Garcia Lisboa, Sérgio Nery Simões, Ana C. V. Krepischi, Carla Rosenberg, Naila Cristina Lourenço, Maria Rita Passos-Bueno, Helena Brentani

published 24 Jan 2017

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Rare Synaptogenesis-Impairing Mutations in SLITRK5 Are Associated with Obsessive Compulsive Disorder

Minseok Song, Carol A. Mathews, S. Evelyn Stewart, Sergey V. Shmelkov, Jason G. Mezey, Juan L. Rodriguez-Flores, Steven A. Rasmussen, Jennifer C. Britton, Yong-Seok Oh, John T. Walkup, Francis S. Lee, Charles E. Glatt

published 13 Jan 2017

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche

published 04 Jan 2017

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A New Genetic Diagnostic for Enlarged Vestibular Aqueduct Based on Next-Generation Sequencing

Yalan Liu, Lili Wang, Yong Feng, Chufeng He, Deyuan Liu, Xinzhang Cai, Lu Jiang, Hongsheng Chen, Chang Liu, Hong Wu, Lingyun Mei

published 20 Dec 2016

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PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)

Gökhan Karakülah, Kuaybe Yücebilgili Kurtoğlu, Turgay Unver

published 09 Dec 2016

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Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides ritzemabosi (Aphelenchida: Aphelenchoididae)

Yu Xiang, Dong-Wei Wang, Jun-Yi Li, Hui Xie, Chun-Ling Xu, Yu Li

published 22 Nov 2016

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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

James B. Pettengill, Arthur W. Pightling, Joseph D. Baugher, Hugh Rand, Errol Strain

published 10 Nov 2016

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