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Genomic databases

Doing more with less: Genomic quasi-G-primes differentiate septic from healthy patients

Congzhou M. Sha, Michail Patsakis, Ioannis Mouratidis, Xiaoyuan Wei, Taejung Chung, Jasna Kovac, Ilias Georgakopoulos-Soares

published 06 Feb 2026

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Candidate orphan genes: Reassessing uniqueness

Sheetalpreet K. Maan, Xuan Y. Butzin, Steven X. Ge, Nicholas C. Butzin

published 31 Dec 2025

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eDNA reveals spatial differences in species composition of protected rockfishes

Stephanie A. Matthews, Olivia M. Scott, Meredith V. Everett, Megan R. Shaffer, Elizabeth Andruszkiewicz Allan, Andrew O. Shelton, Gregory D. Williams, Abigail Wells, Krista M. Nichols, Ryan P. Kelly

published 01 Dec 2025

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Extensive novel diversity and phenotypic associations in the dromedary camel microbiome are revealed through deep metagenomics and machine learning

Fathi A. Mubaraki

published 17 Jul 2025

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Characterization of Congregicoccus parvus gen. nov., sp. nov., a novel slow-growing ultramicrobacterium of the phylum Verrucomicrobiota

Md. Samiul Islam, Kyosuke Yamamoto, Naoki Morita, Wataru Kitagawa, Isao Yumoto, Souichiro Kato, Ryosuke Nakai, Kensuke Igarashi

published 25 Jun 2025

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Genetic variations and recurrence in stage III Korean colorectal cancer: Insights from tumor-only mutation analysis

Hajin Jeon, Jong Lyul Lee, Hyeran Shim, Soobok Joe, Iksu Byeon, Chan Wook Kim, Seok-Byung Lim, In Ja Park, Yong Sik Yoon, Hoang Bao Khanh Chu, Young-Joon Kim, Chang Sik Yu, Jin Ok Yang

published 23 May 2025

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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site

Rebecca A. Reiss, Peter A. Guerra, Oleg Makhnin, Matthew Kellom

published 14 Feb 2025

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Comparison of qPCR protocols for quantification of “Candidatus Saccharibacteria”, belonging to the Candidate Phyla Radiation, suggests that 23S rRNA is a better target than 16S rRNA

Stella Papaleo, Riccardo Nodari, Lodovico Sterzi, Enza D’Auria, Camilla Cattaneo, Giorgia Bettoni, Clara Bonaiti, Ella Pagliarini, Gianvincenzo Zuccotti, Simona Panelli, Francesco Comandatore

published 26 Dec 2024

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Network analysis retrieving bioactive compounds from Spirulina (Arthrospira platensis) and their targets related to systemic lupus erythematosus

Amnart Chaiprasert, Ping Han, Teeraphan Laomettachit, Marasri Ruengjitchatchawalya

published 29 Aug 2024

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Proteomics analysis of deep fascia in acute compartment syndrome

Haofei Wang, Yan Liu, Sujuan Xu, Tao Wang, Xiaojun Chen, Huiyang Jia, Qi Dong, Heng Zhang, Shuai Wang, Huijie Ma, Zhiyong Hou

published 01 Jul 2024

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Bioinformatics for Dentistry: A secondary database for the genetics of tooth development

Ava K. Chow, Rachel Low, Jerald Yuan, Karen K. Yee, Jaskaranjit Kaur Dhaliwal, Shanice Govia, Nazlee Sharmin

published 06 Jun 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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De novo copy number variations in candidate genomic regions in patients of severe autism spectrum disorder in Vietnam

Hoa Thi Phuong Bui, Duong Huy Do, Ha Thi Thanh Ly, Kien Trung Tran, Huong Thi Thanh Le, Kien Trung Nguyen, Linh Thi Dieu Pham, Hau Duc Le, Vinh Sy Le, Arijit Mukhopadhyay, Liem Thanh Nguyen

published 07 Mar 2024

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