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Genome sequencing

Herpes simplex virus detection and genomes from under-sampled, remote populations

Christopher D. Bowen, Alexandre Blake, Daniel W. Renner, Mary Ashley Hazel, John Jakurama, Justy Matundu, Moriah L. Szpara, Nita Bharti

published 24 Jul 2026

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Genome misassembly detection using Stash: A data structure based on stochastic tile hashing

Armaghan Sarvar, Lauren Coombe, Inanc Birol

published 13 Jul 2026

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Whole-genome sequencing reveals a previously unrecognized measles virus cluster in Burundi

Néhémie Nzoyikorera, David F. Nieuwenhuijse, Leonard Schuele, Cassien Nduwimana, Armstrong Ndihokubwayo, Théogène Ihorimbere, Denis Niyomwungere, Hayley Cassidy, Marjan Boter, Celestin Nibogora, Richard Molenkamp, Alexis Niyomwungere, Dionis Nizigiyimana, Marie Noelle Uwineza, Idrissa Diawara, Saria Otani, Rogier Bodewes, Frank M. Aarestrup, Marion Koopmans, Joseph Nyandwi, Bas B. Oude Munnink

published 30 Jun 2026

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Potentials and challenges of next generation sequencing-guided individualized treatment for management of rifampicin-resistant tuberculosis – A qualitative study

Tu Pham Hien Trang, Antonio Barrenechea-Pulache, Katinka De Wet, Boitumelo Fanampe, Salome Charalambous, Annelies Van Rie

published 26 Jun 2026

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Detection of Coxsackievirus A24v during an acute haemorrhagic conjunctivitis outbreak in Dar es Salaam, Tanzania, January-February 2024

Lawrence A. Mapunda, Peter van Heusden, Robert Baluhya, Olympia G. Machange, Ambele Mwafulango, Monica Fredrick Francis, Aziz Ituka, Omega Machange, Adela Kisanga, Edna E. Mgimba, Hamza H. Matimba, Dennis M. Kado, Elson E. Kimaro, Ramadhani A. Libenanga, Jackson Peter Mushumbusi, Hamisi M. Swalehe, Ibrahim Mauki, James Hellar, Shimba Henerico, Maria E. Kelly, Nyambura Moremi

published 25 Jun 2026

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Regional VRE surveillance using routine centralised, multicentre whole genome sequencing

Djamayl L. H. H. Engelen, Jean-Luc Murk, Veronica A. T. C. Weterings, Heike Schmitt, Bram M. W. Diederen, Andreas L. E. van Arkel, Jaco J. Verweij, Wouter van den Bijllaardt, Jeroen H. T. Tjhie, Joep J. J. M. Stohr

published 25 Jun 2026

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Sequencing complete plasmids on Oxford Nanopore Technologies sequencers using R2C2 and Chopper

Kayla D. Schimke, Christopher Vollmers

published 10 Apr 2026

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In vitro culture of human-infecting Encephalitozoon spp. for genome sequencing with minimal host contaminant

Anne Caroline Mascarenhas dos Santos, Pingdong Liang, Oscar X. Juárez, Jean-François Pombert, Karina Tuz

published 11 Mar 2026

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96 sample parallel acoustic fragmentation for high throughput next generation sequencing library preparation

Marjan Mehrab-Mohseni, Kathlyne Jayne B. Bautista, Yusha Liu, Erika E. Maldonado-Rosado, Haofan Zheng, Matthew J. Niederhuber, Jonathan D. Rosen, Michell D. Carroll, Brian Velasco, James K. Tsuruta, Jinwook Kim, James S. Marron, Perry D. Haaland, Sandeep K. Kasoji, Piotr A. Mieczkowski, Austin J. Hepperla, Paul A. Dayton, Samantha G. Pattenden

published 17 Feb 2026

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Genetic diversity and population structure of the natural population of Helicoverpa armigera in Northwest China using Genotyping by Sequencing (GBS) technology

Zhongxiong Ning, Jiali He, Jianhao Dong, Weizheng Li, Ruihao Li, Zhengzhen Gao, Dongmei Wang, Haiqiang Li, Bing Liu, Yujiao Wang, Wei Lu

published 06 Nov 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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A comparison of DNA methylation detection between HiFi sequencing and whole genome bisulfite sequencing in monozygotic twins with Down syndrome

Kanyanee Promsawan, Chalurmpon Srichomthong, Monnat Pongpanich, Vorasuk Shotelersuk

published 05 Aug 2025

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