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Genome sequencing

96 sample parallel acoustic fragmentation for high throughput next generation sequencing library preparation

Marjan Mehrab-Mohseni, Kathlyne Jayne B. Bautista, Yusha Liu, Erika E. Maldonado-Rosado, Haofan Zheng, Matthew J. Niederhuber, Jonathan D. Rosen, Michell D. Carroll, Brian Velasco, James K. Tsuruta, Jinwook Kim, James S. Marron, Perry D. Haaland, Sandeep K. Kasoji, Piotr A. Mieczkowski, Austin J. Hepperla, Paul A. Dayton, Samantha G. Pattenden

published 17 Feb 2026

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Genetic diversity and population structure of the natural population of Helicoverpa armigera in Northwest China using Genotyping by Sequencing (GBS) technology

Zhongxiong Ning, Jiali He, Jianhao Dong, Weizheng Li, Ruihao Li, Zhengzhen Gao, Dongmei Wang, Haiqiang Li, Bing Liu, Yujiao Wang, Wei Lu

published 06 Nov 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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A comparison of DNA methylation detection between HiFi sequencing and whole genome bisulfite sequencing in monozygotic twins with Down syndrome

Kanyanee Promsawan, Chalurmpon Srichomthong, Monnat Pongpanich, Vorasuk Shotelersuk

published 05 Aug 2025

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Analysing genome sequences and associated metadata during the COVID-19 pandemic in Iraq revealed points to be improved: An observational retrospective study

Ali Hadi Abbas, Aoula Al-Zebeeby, Mohammed Al-Saadi, Ahmed Jasim Neamah

published 30 Jun 2025

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

published 16 Jun 2025

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MAGNET-seq: A tandem PCR and hybrid capture method for enhanced target enrichment

Dongin Lee, Taehoon Kim, Duhee Bang

published 04 Jun 2025

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Characterization and whole genome sequencing of Saccharomyces cerevisiae strains lacking several amino acid transporters: Tools for studying amino acid transport

Unnati Sonawala, Aymeric Busidan, David Haak, Guillaume Pilot

published 30 Apr 2025

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Rapidly obtaining genome sequence of Severe Fever with Thrombocytopenia Syndrome virus directly from clinical serum specimen using long amplicon based nanopore sequencing workflow

Tingting Tian, Yanhan Wen, Liping Gao, Tiezhu Liu, Xiaoxia Huang, Chuan Li, Shanshan Du, Hao Li, Meijun Guo, Jiandong Li, Shiwen Wang, Dexin Li, Aqian Li, Mifang Liang

published 25 Apr 2025

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Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: A qualitative process evaluation using normalisation process theory

Ruth Leiser, Julie McLeod, Fiona Mapp, Oliver Stirrup, James Blackstone, Christopher J.R. Illingworth, Gaia Nebbia, James R. Price, Luke B. Snell, Tranprit Saluja, Judith Breuer, Paul Flowers

published 17 Apr 2025

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A CACTA-like transposon in the Anthocyanidin synthase 1 (Ans-1) gene is responsible for apricot fruit colour in the raspberry (Rubus idaeus) cultivar ‘Varnes’

Daniel James Sargent, Matteo Buti, Stefan Martens, Claudio Pugliesi, Kjersti Aaby, Dag Røen, Chandra Bhan Yadav, Felicidad Fernández Fernández, Muath Alsheikh, Jahn Davik, R. Jordan Price

published 03 Feb 2025

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Unique North American isolates of severe metastatic hypervirulent Klebsiella pneumoniae strain infections with hepatic abscesses seen in young patients within Texas

Junaid M. Alam, Eric N. Riha, Haris Ahmed, Hong M. Thai, Kevin Garnepudi, Ramesh B. Kesavan, Gnananandh Jayaraman, Anna Sangster, Dylan Curry, Heidi A. Butz, Lori Smith, Maureen Vowles, Kelly F. Oakeson, Erin L. Young, Siva T. Sarva

published 03 Feb 2025

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