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Genome sequencing

Whole genome sequencing of extended-spectrum β-lactamase genes in Enterobacteriaceae isolates from Nigeria

Christiana Jesumirhewe, Burkhard Springer, Franz Allerberger, Werner Ruppitsch

Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

Katarina Benulič, Mateja Pirš, [ ... ], Tjaša Cerar

Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

Agnes Scheunert, Marco Dorfner, Thomas Lingl, Christoph Oberprieler

Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing

Dmitriy Korostin, Nikolay Kulemin, [ ... ], Alexey Gorbachev

Induction of competent cells for Agrobacterium tumefaciens-mediated stable transformation of common bean (Phaseolus vulgaris L.)

Guo-qing Song, Xue Han, [ ... ], James D. Kelly

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Carly F. Graham, Douglas R. Boreham, [ ... ], Christopher M. Somers

Clinical, cytogenetic and molecular genetic characterization of a tandem fusion translocation in a male Holstein cattle with congenital hypospadias and a ventricular septal defect

Alessandra Iannuzzi, Marina Braun, [ ... ], Ottmar Distl

Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis: A comparison of whole genome and RAD sequencing data

Frédéric G. Masclaux, Tania Wyss, [ ... ], Ian R. Sanders

Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae

Jérôme Ambroise, Léonid M. Irenge, [ ... ], Jean-Luc Gala

Ion torrent high throughput mitochondrial genome sequencing (HTMGS)

N. R. Harvey, C. L. Albury, [ ... ], L. R. Griffiths

Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation

Jee-Soo Park, Ji-Hyun Park, Young-Doo Park

Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies

Giltae Song, Jongin Lee, [ ... ], Jaebum Kim

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