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Genome sequencing

A haplotype-phased genome of wheat stripe rust pathogen Puccinia striiformis f. sp. tritici, race PST-130 from the Western USA

Hans Vasquez-Gross, Sukhwinder Kaur, Lynn Epstein, Jorge Dubcovsky

Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly

Christopher H. Gu, Chunyu Zhao, [ ... ], Frederic D. Bushman

The major satellite DNA families of the diploid Chenopodium album aggregate species: Arguments for and against the “library hypothesis”

Alexander Belyayev, Michaela Jandová, [ ... ], Karol Krak

A comparative study of single nucleotide variant detection performance using three massively parallel sequencing methods

Linea Christine Trudsø, Jeppe Dyrberg Andersen, [ ... ], Niels Morling

Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR

Kentaro Itokawa, Tsuyoshi Sekizuka, [ ... ], Makoto Kuroda

Shiny-SoSV: A web-based performance calculator for somatic structural variant detection

Tingting Gong, Vanessa M. Hayes, Eva K. F. Chan

Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Marcel Kucharik, Andrej Gnip, [ ... ], Tomas Szemes

ShAn: An easy-to-use tool for interactive and integrated variant annotation

Venkat Subramaniam Rathinakannan, Hannu-Pekka Schukov, [ ... ], Csilla Sipeky

Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies

Zhao Chen, Dai Kuang, [ ... ], Jianghong Meng

Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, [ ... ], Mi-Kyung Lee

Genetic profiling of Mycobacterium tuberculosis revealed “modern” Beijing strains linked to MDR-TB from Southwestern Colombia

Luisa Maria Nieto Ramirez, Beatriz E. Ferro, [ ... ], Dick van Soolingen

Advancing clinical cohort selection with genomics analysis on a distributed platform

Jaclyn M. Smith, Melvin Lathara, [ ... ], Christopher T. Denny

Nosocomial transmission of extensively drug resistant Acinetobacter baumannii strains in a tertiary level hospital

Paúl Alexis López-Durán, Salvador Fonseca-Coronado, [ ... ], Elsa Saldaña-Rivera

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