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Genome annotation

More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body

Xing Yang, Lu Xie, Yixue Li, Chaochun Wei

published 29 Jun 2009

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Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, Karin Lagesen, Jessica M. Lindvall, Torbjørn Rognes

published 17 Jun 2009

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Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

published 12 Jun 2009

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Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, Riccardo Velasco, Elide Formentin, Stefano Toppo

published 27 Feb 2009

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Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

published 23 Jan 2009

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Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression

Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, Philip N. Benfey

published 07 Nov 2008

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Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy

Ki-Hong Jung, Christopher Dardick, Laura E. Bartley, Peijian Cao, Jirapa Phetsom, Patrick Canlas, Young-Su Seo, Michael Shultz, Shu Ouyang, Qiaoping Yuan, Bryan C. Frank, Eugene Ly, Li Zheng, Yi Jia, An-Ping Hsia, Kyungsook An, Hui-Hsien Chou, David Rocke, Geun Cheol Lee, Patrick S. Schnable, Gynheung An, C. Robin Buell, Pamela C. Ronald

published 06 Oct 2008

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High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

published 12 Sep 2008

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Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

published 29 Aug 2008

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Improved Elucidation of Biological Processes Linked to Diabetic Nephropathy by Single Probe-Based Microarray Data Analysis

Clemens D. Cohen, Maja T. Lindenmeyer, Felix Eichinger, Alexander Hahn, Martin Seifert, Anton G. Moll, Holger Schmid, Eva Kiss, Elisabeth Gröne, Hermann-Josef Gröne, Matthias Kretzler, Thomas Werner, Peter J. Nelson

published 13 Aug 2008

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Identify Alternative Splicing Events Based on Position-Specific Evolutionary Conservation

Liang Chen, Sika Zheng

published 30 Jul 2008

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Functional Annotation and Identification of Candidate Disease Genes by Computational Analysis of Normal Tissue Gene Expression Data

Laura Miozzi, Rosario Michael Piro, Fabio Rosa, Ugo Ala, Lorenzo Silengo, Ferdinando Di Cunto, Paolo Provero

published 18 Jun 2008

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Alternative Promoters Influence Alternative Splicing at the Genomic Level

Dedong Xin, Landian Hu, Xiangyin Kong

published 18 Jun 2008

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