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Genome annotation

Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression

Juliette Colinas, Scott C. Schmidler, [ ... ], Philip N. Benfey

Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy

Ki-Hong Jung, Christopher Dardick, [ ... ], Pamela C. Ronald

High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

Improved Elucidation of Biological Processes Linked to Diabetic Nephropathy by Single Probe-Based Microarray Data Analysis

Clemens D. Cohen, Maja T. Lindenmeyer, [ ... ], Peter J. Nelson

Identify Alternative Splicing Events Based on Position-Specific Evolutionary Conservation

Liang Chen, Sika Zheng

Functional Annotation and Identification of Candidate Disease Genes by Computational Analysis of Normal Tissue Gene Expression Data

Laura Miozzi, Rosario Michael Piro, [ ... ], Paolo Provero

Alternative Promoters Influence Alternative Splicing at the Genomic Level

Dedong Xin, Landian Hu, Xiangyin Kong

De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

R. Matthew Ward, Serkan Erdin, [ ... ], Olivier Lichtarge

Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles

David Vallenet, Patrice Nordmann, [ ... ], Stéphane Cruveiller

Protein Function Assignment through Mining Cross-Species Protein-Protein Interactions

Xue-wen Chen, Mei Liu, Robert Ward

Gene Characterization Index: Assessing the Depth of Gene Annotation

Danielle Kemmer, Raf M. Podowski, [ ... ], Wyeth W. Wasserman

An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae

Insuk Lee, Zhihua Li, Edward M. Marcotte

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