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Genome annotation

ChIP-Chip Designs to Interrogate the Genome of Xenopus Embryos for Transcription Factor Binding and Epigenetic Regulation

Robert C. Akkers, Simon J. van Heeringen, [ ... ], Gert Jan C. Veenstra

Disease Gene Characterization through Large-Scale Co-Expression Analysis

Allen Day, Jun Dong, [ ... ], Stanley F. Nelson

Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

Wook Kim, Mark W. Silby, [ ... ], Stuart B. Levy

Comparative Analysis of the Global Transcriptome of Anopheles funestus from Mali, West Africa

Andrew C. Serazin, Ali N. Dana, [ ... ], Nora J. Besansky

Probe-Level Analysis of Expression Microarrays Characterizes Isoform-Specific Degradation during Mouse Oocyte Maturation

Jesse Salisbury, Keith W. Hutchison, [ ... ], Joel H. Graber

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

Yubo Hou, Senjie Lin

Local Network Topology in Human Protein Interaction Data Predicts Functional Association

Hua Li, Shoudan Liang

Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

Peter Bakke, Nick Carney, [ ... ], A. Malcolm Campbell

More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body

Xing Yang, Lu Xie, Yixue Li, Chaochun Wei

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, [ ... ], Torbjørn Rognes

Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, [ ... ], Stefano Toppo

Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

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