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Genome annotation

Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

Comparison of Four ChIP-Seq Analytical Algorithms Using Rice Endosperm H3K27 Trimethylation Profiling Data

Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng

Phylogenetic and Functional Metagenomic Profiling for Assessing Microbial Biodiversity in Environmental Monitoring

Veljo Kisand, Angelica Valente, [ ... ], Teresa Lettieri

Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

Oliver Rupp, Jennifer Becker, [ ... ], Alexander Goesmann

PON-P2: Prediction Method for Fast and Reliable Identification of Harmful Variants

Abhishek Niroula, Siddhaling Urolagin, Mauno Vihinen

Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics

Ayal B. Gussow, Brett R. Copeland, [ ... ], David B. Goldstein

An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae

Insuk Lee, Zhihua Li, Edward M. Marcotte

Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing

Jie Xiong, Xingyi Lu, [ ... ], Wei Miao

A Snapshot of a Coral “Holobiont”: A Transcriptome Assembly of the Scleractinian Coral, Porites, Captures a Wide Variety of Genes from Both the Host and Symbiotic Zooxanthellae

Chuya Shinzato, Mayuri Inoue, Makoto Kusakabe

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

Megan J. Bowman, Wonkeun Park, [ ... ], B. Todd Campbell

cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing

Maria Cartolano, Bruno Huettel, [ ... ], Korbinian Schneeberger

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, [ ... ], Gustavo C. Cerqueira

Comparison of the Transcriptomes of Ginger (Zingiber officinale Rosc.) and Mango Ginger (Curcuma amada Roxb.) in Response to the Bacterial Wilt Infection

Duraisamy Prasath, Raveendran Karthika, [ ... ], Muthuswamy Anandaraj

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