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Genome annotation

Protein embeddings improve phage-host interaction prediction

Mark Edward M. Gonzales, Jennifer C. Ureta, Anish M. S. Shrestha

published 24 Jul 2023

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Divergence of cochlear transcriptomics between reference‑based and reference‑free transcriptome analyses among Rhinolophus ferrumequinum populations

Xiaoxiao Shi, Jun Li, Tong Liu, Hanbo Zhao, Haixia Leng, Keping Sun, Jiang Feng

published 11 Jul 2023

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Horizontal transfer of probable chicken-pathogenicity chromosomal islands between Staphylococcus aureus and Staphylococcus agnetis

Douglas D. Rhoads, Jeff Pummil, Nnamdi S. Ekesi, Adnan A. K. Alrubaye

published 05 Jul 2023

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Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis

Anuraj Nayarisseri, Sanjeev Kumar Singh

published 02 Jun 2023

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Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models

Arianna Consiglio, Marco Venturin, Sabrina Briguglio, Clara Rossi, Giorgio Grillo, Stefano Bellosta, Maria Grazia Cattaneo, Flavio Licciulli, Cristina Battaglia

published 30 May 2023

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Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, Felicidad Fernandéz Fernandéz, Helen J. Bates, Samantha Lynn, Charlotte F. Nellist, Matteo Buti, Dag Røen, Nada Šurbanovski, Muath Alsheikh, Richard J. Harrison, Daniel James Sargent

published 16 May 2023

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Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis

Sanzhar Naizabekov, Seung Woon Hyun, Jeong-Geol Na, Sukhwan Yoon, Ok Kyung Lee, Eun Yeol Lee

published 10 May 2023

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Isolation of strains and their genome sequencing to analyze the mating system of Ophiocordyceps robertsii

Melvin Xu, Nathan A. Ashley, Niloofar Vaghefi, Ian Wilkinson, Alexander Idnurm

published 02 May 2023

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Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits

Jérémy Berthelier, Bruno Saint-Jean, Nathalie Casse, Gaël Bougaran, Grégory Carrier

published 27 Apr 2023

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A phenotype driven integrative framework uncovers molecular mechanisms of a rare hereditary thrombophilia

Noël Malod-Dognin, Gaia Ceddia, Maja Gvozdenov, Branko Tomić, Sofija Dunjić Manevski, Valentina Djordjević, Nataša Pržulj

published 25 Apr 2023

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Bioinformatic analysis predicts that ethanol exposure during early development causes alternative splicing alterations of genes involved in RNA post-transcriptional regulation

Camilo Fuentes-Beals, Montserrat Olivares-Costa, María Estela Andrés, Paola A. Haeger, Gonzalo Riadi, Carlos Oliva, Fernando Faunes

published 13 Apr 2023

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Apiaceae FNS I originated from F3H through tandem gene duplication

Boas Pucker, Massimo Iorizzo

published 19 Jan 2023

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MAGNET: A web-based application for gene set enrichment analysis using macrophage data sets

Shang-Yang Chen, Gaurav Gadhvi, Deborah R. Winter

published 11 Jan 2023

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