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Genome annotation

AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, Li Cheng, Maxim Khitrov, Deepak Grover, Ravi Vijaya Satya, Chenggang Yu, Nela Zavaljevski, Jaques Reifman

published 07 Mar 2011

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Ratio-Based Analysis of Differential mRNA Processing and Expression of a Polyadenylation Factor Mutant pcfs4 Using Arabidopsis Tiling Microarray

Jianti Zheng, Denghui Xing, Xiaohui Wu, Yingjia Shen, Diana M. Kroll, Guoli Ji, Qingshun Quinn Li

published 25 Feb 2011

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Mitochondrial Genome Sequence and Expression Profiling for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)

Venu M. Margam, Brad S. Coates, Richard L. Hellmich, Tolulope Agunbiade, Manfredo J. Seufferheld, Weilin Sun, Malick N. Ba, Antoine Sanon, Clementine L. Binso-Dabire, Ibrahim Baoua, Mohammad F. Ishiyaku, Fernando G. Covas, Ramasamy Srinivasan, Joel Armstrong, Larry L. Murdock, Barry R. Pittendrigh

published 02 Feb 2011

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Considering Transposable Element Diversification in De Novo Annotation Approaches

Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville

published 31 Jan 2011

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Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics

Christopher M. Seabury, Eric K. Bhattarai, Jeremy F. Taylor, Ganesh G. Viswanathan, Susan M. Cooper, Donald S. Davis, Scot E. Dowd, Mitch L. Lockwood, Paul M. Seabury

published 19 Jan 2011

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DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing

Fabienne Brenet, Michelle Moh, Patricia Funk, Erika Feierstein, Agnes J. Viale, Nicholas D. Socci, Joseph M. Scandura

published 18 Jan 2011

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Detecting Cancer Gene Networks Characterized by Recurrent Genomic Alterations in a Population

Sol Efroni, Rotem Ben-Hamo, Michael Edmonson, Sharon Greenblum, Carl F. Schaefer, Kenneth H. Buetow

published 04 Jan 2011

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A Gross Anatomy Ontology for Hymenoptera

Matthew J. Yoder, István Mikó, Katja C. Seltmann, Matthew A. Bertone, Andrew R. Deans

published 29 Dec 2010

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Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides

Gard O. S. Thomassen, Ragnhild Weel-Sneve, Alexander D. Rowe, James A. Booth, Jessica M. Lindvall, Karin Lagesen, Knut I. Kristiansen, Magnar Bjørås, Torbjørn Rognes

published 23 Dec 2010

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Natural Variation of the Amino-Terminal Glutamine-Rich Domain in Drosophila Argonaute2 Is Not Associated with Developmental Defects

Daniel Hain, Brian R. Bettencourt, Katsutomo Okamura, Tibor Csorba, Wibke Meyer, Zhigang Jin, Jason Biggerstaff, Haruhiko Siomi, Gyorgy Hutvagner, Eric C. Lai, Michael Welte, H.-Arno J. Müller

published 17 Dec 2010

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A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology

Martin J. Blythe, Damian Kao, Sunir Malla, Joanna Rowsell, Ray Wilson, Deborah Evans, Jamie Jowett, Amy Hall, Virginie Lemay, Sabrina Lam, A. Aziz Aboobaker

published 14 Dec 2010

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Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge

published 13 Dec 2010

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Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Ping Gong, Mehdi Pirooznia, Xin Guan, Edward J. Perkins

published 08 Dec 2010

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