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Genome annotation

Domestication of Transposable Elements into MicroRNA Genes in Plants

Yang Li, Chaoqun Li, Jie Xia, Youxin Jin

published 03 May 2011

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Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

Chuming Chen, Darren A. Natale, Robert D. Finn, Hongzhan Huang, Jian Zhang, Cathy H. Wu, Raja Mazumder

published 27 Apr 2011

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Using Functional Annotation for the Empirical Determination of Bayes Factors for Genome-Wide Association Study Analysis

Jo Knight, Michael R. Barnes, Gerome Breen, Michael E. Weale

published 27 Apr 2011

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An Integrated Approach for Finding Overlooked Genes in Shigella

Junping Peng, Jian Yang, Qi Jin

published 05 Apr 2011

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Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A

Ziping Zhang, Yilei Wang, Shuhong Wang, Jingtao Liu, Wesley Warren, Makedonka Mitreva, Ronald B. Walter

published 05 Apr 2011

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Predicting Protein Phenotypes Based on Protein-Protein Interaction Network

Lele Hu, Tao Huang, Xiao-Jun Liu, Yu-Dong Cai

published 10 Mar 2011

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HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, Robert Henschel, Matthias Stefan Mueller, Bianca Hermine Habermann

published 10 Mar 2011

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TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

published 08 Mar 2011

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Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases

Xinli Sun, Guo-Liang Wang

published 08 Mar 2011

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AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, Li Cheng, Maxim Khitrov, Deepak Grover, Ravi Vijaya Satya, Chenggang Yu, Nela Zavaljevski, Jaques Reifman

published 07 Mar 2011

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Ratio-Based Analysis of Differential mRNA Processing and Expression of a Polyadenylation Factor Mutant pcfs4 Using Arabidopsis Tiling Microarray

Jianti Zheng, Denghui Xing, Xiaohui Wu, Yingjia Shen, Diana M. Kroll, Guoli Ji, Qingshun Quinn Li

published 25 Feb 2011

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Mitochondrial Genome Sequence and Expression Profiling for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)

Venu M. Margam, Brad S. Coates, Richard L. Hellmich, Tolulope Agunbiade, Manfredo J. Seufferheld, Weilin Sun, Malick N. Ba, Antoine Sanon, Clementine L. Binso-Dabire, Ibrahim Baoua, Mohammad F. Ishiyaku, Fernando G. Covas, Ramasamy Srinivasan, Joel Armstrong, Larry L. Murdock, Barry R. Pittendrigh

published 02 Feb 2011

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Considering Transposable Element Diversification in De Novo Annotation Approaches

Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville

published 31 Jan 2011

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