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Genome annotation

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

Liliana Florea, Alexander Souvorov, Theodore S. Kalbfleisch, Steven L. Salzberg

A Compendium of Canine Normal Tissue Gene Expression

Joseph Briggs, Melissa Paoloni, [ ... ], Chand Khanna

Combining Computational Prediction of Cis-Regulatory Elements with a New Enhancer Assay to Efficiently Label Neuronal Structures in the Medaka Fish

Emmanuel Mongin, Thomas O. Auer, [ ... ], Laurence Ettwiller

Evaluating the Fidelity of De Novo Short Read Metagenomic Assembly Using Simulated Data

Miguel Pignatelli, Andrés Moya

Domestication of Transposable Elements into MicroRNA Genes in Plants

Yang Li, Chaoqun Li, Jie Xia, Youxin Jin

Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

Chuming Chen, Darren A. Natale, [ ... ], Raja Mazumder

Using Functional Annotation for the Empirical Determination of Bayes Factors for Genome-Wide Association Study Analysis

Jo Knight, Michael R. Barnes, Gerome Breen, Michael E. Weale

An Integrated Approach for Finding Overlooked Genes in Shigella

Junping Peng, Jian Yang, Qi Jin

Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A

Ziping Zhang, Yilei Wang, [ ... ], Ronald B. Walter

Predicting Protein Phenotypes Based on Protein-Protein Interaction Network

Lele Hu, Tao Huang, Xiao-Jun Liu, Yu-Dong Cai

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, [ ... ], Bianca Hermine Habermann

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases

Xinli Sun, Guo-Liang Wang

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