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Genome annotation

Comparison of Four ChIP-Seq Analytical Algorithms Using Rice Endosperm H3K27 Trimethylation Profiling Data

Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng

published 30 Sep 2011

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Functional Analysis beyond Enrichment: Non-Redundant Reciprocal Linkage of Genes and Biological Terms

Celia Fontanillo, Ruben Nogales-Cadenas, Alberto Pascual-Montano, Javier De Las Rivas

published 16 Sep 2011

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Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

Dario Cantu, Manjula Govindarajulu, Alex Kozik, Meinan Wang, Xianming Chen, Kenji K. Kojima, Jerzy Jurka, Richard W. Michelmore, Jorge Dubcovsky

published 31 Aug 2011

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Genomic Sequence around Butterfly Wing Development Genes: Annotation and Comparative Analysis

Inês C. Conceição, Anthony D. Long, Jonathan D. Gruber, Patrícia Beldade

published 31 Aug 2011

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Annotation of Two Large Contiguous Regions from the Haemonchus contortus Genome Using RNA-seq and Comparative Analysis with Caenorhabditis elegans

Roz Laing, Martin Hunt, Anna V. Protasio, Gary Saunders, Karen Mungall, Steven Laing, Frank Jackson, Michael Quail, Robin Beech, Matthew Berriman, John S. Gilleard

published 15 Aug 2011

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Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis

Julien de Lorgeril, Reda Zenagui, Rafael D. Rosa, David Piquemal, Evelyne Bachère

published 04 Aug 2011

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SEAS: A System for SEED-Based Pathway Enrichment Analysis

Xizeng Mao, Yu Zhang, Ying Xu

published 22 Jul 2011

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Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

Kevin L. Childs, Rebecca M. Davidson, C. Robin Buell

published 22 Jul 2011

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HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization

Sahar Abubucker, John Martin, Christina M. Taylor, Makedonka Mitreva

published 08 Jul 2011

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GenExp: An Interactive Web-Based Genomic DAS Client with Client-Side Data Rendering

Bernat Gel Moreno, Xavier Messeguer Peypoch

published 05 Jul 2011

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Enzymes Are Enriched in Bacterial Essential Genes

Feng Gao, Randy Ren Zhang

published 28 Jun 2011

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Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

Liliana Florea, Alexander Souvorov, Theodore S. Kalbfleisch, Steven L. Salzberg

published 22 Jun 2011

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A Compendium of Canine Normal Tissue Gene Expression

Joseph Briggs, Melissa Paoloni, Qing-Rong Chen, Xinyu Wen, Javed Khan, Chand Khanna

published 31 May 2011

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