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Genome annotation

Miniature Transposable Sequences Are Frequently Mobilized in the Bacterial Plant Pathogen Pseudomonas syringae pv. phaseolicola

Leire Bardaji, Maite Añorga, [ ... ], Jesús Murillo

S-MART, A Software Toolbox to Aid RNA-seq Data Analysis

Matthias Zytnicki, Hadi Quesneville

Comparison of Four ChIP-Seq Analytical Algorithms Using Rice Endosperm H3K27 Trimethylation Profiling Data

Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng

Functional Analysis beyond Enrichment: Non-Redundant Reciprocal Linkage of Genes and Biological Terms

Celia Fontanillo, Ruben Nogales-Cadenas, Alberto Pascual-Montano, Javier De Las Rivas

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

Dario Cantu, Manjula Govindarajulu, [ ... ], Jorge Dubcovsky

Genomic Sequence around Butterfly Wing Development Genes: Annotation and Comparative Analysis

Inês C. Conceição, Anthony D. Long, Jonathan D. Gruber, Patrícia Beldade

Annotation of Two Large Contiguous Regions from the Haemonchus contortus Genome Using RNA-seq and Comparative Analysis with Caenorhabditis elegans

Roz Laing, Martin Hunt, [ ... ], John S. Gilleard

Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis

Julien de Lorgeril, Reda Zenagui, [ ... ], Evelyne Bachère

SEAS: A System for SEED-Based Pathway Enrichment Analysis

Xizeng Mao, Yu Zhang, Ying Xu

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

Kevin L. Childs, Rebecca M. Davidson, C. Robin Buell

HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization

Sahar Abubucker, John Martin, Christina M. Taylor, Makedonka Mitreva

GenExp: An Interactive Web-Based Genomic DAS Client with Client-Side Data Rendering

Bernat Gel Moreno, Xavier Messeguer Peypoch

Enzymes Are Enriched in Bacterial Essential Genes

Feng Gao, Randy Ren Zhang

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