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Genome annotation

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

Daniel R. Mende, Alison S. Waller, Shinichi Sunagawa, Aino I. Järvelin, Michelle M. Chan, Manimozhiyan Arumugam, Jeroen Raes, Peer Bork

published 23 Feb 2012

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Optimizing a Massive Parallel Sequencing Workflow for Quantitative miRNA Expression Analysis

Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Susanna Donatelli, Raffaele A. Calogero

published 20 Feb 2012

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Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing

Jie Xiong, Xingyi Lu, Zhemin Zhou, Yue Chang, Dongxia Yuan, Miao Tian, Zhigang Zhou, Lei Wang, Chengjie Fu, Eduardo Orias, Wei Miao

published 07 Feb 2012

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Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research

Junhee Seok, Weihong Xu, Hui Jiang, Ronald W. Davis, Wenzhong Xiao

published 01 Feb 2012

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In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction

Hansheng Zhao, Mao Li, Kechi Fang, Wenfeng Chen, Jing Wang

published 01 Feb 2012

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GSVD Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival

Cheng H. Lee, Benjamin O. Alpert, Preethi Sankaranarayanan, Orly Alter

published 23 Jan 2012

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RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336”

Ranjit Kumar, Mark L. Lawrence, James Watt, Amanda M. Cooksey, Shane C. Burgess, Bindu Nanduri

published 20 Jan 2012

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Isoform Diversity and Regulation in Peripheral and Central Neurons Revealed through RNA-Seq

Jessica K. Lerch, Frank Kuo, Dario Motti, Richard Morris, John L. Bixby, Vance P. Lemmon

published 17 Jan 2012

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Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome

Nicholas R. Polato, J. Cristobal Vera, Iliana B. Baums

published 28 Dec 2011

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Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

published 12 Dec 2011

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The Impact of Focused Gene Ontology Curation of Specific Mammalian Systems

Yasmin Alam-Faruque, Rachael P. Huntley, Varsha K. Khodiyar, Evelyn B. Camon, Emily C. Dimmer, Tony Sawford, Maria J. Martin, Claire O'Donovan, Philippa J. Talmud, Peter Scambler, Rolf Apweiler, Ruth C. Lovering

published 09 Dec 2011

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Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)

Bin Liu, Gaofei Jiang, Yunfei Zhang, Junli Li, Xiaojiao Li, Jiansu Yue, Fei Chen, Haoqiang Liu, Hongjun Li, Shiping Zhu, Jinjun Wang, Chun Ran

published 05 Dec 2011

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Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

Eli Venter, Richard D. Smith, Samuel H. Payne

published 17 Nov 2011

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