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Genome annotation

A web-based platform for the annotation and analysis of NAR-published databases

Marcel Friedrichs, Cassandra Königs

published 23 Oct 2023

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Genome-based metabolic and phylogenomic analysis of three Terrisporobacter species

Tim Böer, Frank R. Bengelsdorf, Mechthild Bömeke, Rolf Daniel, Anja Poehlein

published 10 Oct 2023

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Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks

Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Johan S. Piña, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Luis Castillo-Ossa, Gustavo Isaza, Romain Guyot

published 21 Sep 2023

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Comprehensive transcriptomic analysis of long non-coding RNAs in bovine ovarian follicles and early embryos

Pengmin Wang, Éric R. Paquet, Claude Robert

published 19 Sep 2023

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Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, Eric I. Tong, Yvonne L. Chan, Nabeeh A. Hasan, Stephanie N. Dawrs, Grant J. Norton, Ravleen Virdi, James L. Crooks, Edward D. Chan, Jennifer R. Honda, Michael Strong

published 13 Sep 2023

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Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks–What about specialised metabolism?

Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

published 30 Aug 2023

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Protein embeddings improve phage-host interaction prediction

Mark Edward M. Gonzales, Jennifer C. Ureta, Anish M. S. Shrestha

published 24 Jul 2023

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Divergence of cochlear transcriptomics between reference‑based and reference‑free transcriptome analyses among Rhinolophus ferrumequinum populations

Xiaoxiao Shi, Jun Li, Tong Liu, Hanbo Zhao, Haixia Leng, Keping Sun, Jiang Feng

published 11 Jul 2023

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Horizontal transfer of probable chicken-pathogenicity chromosomal islands between Staphylococcus aureus and Staphylococcus agnetis

Douglas D. Rhoads, Jeff Pummil, Nnamdi S. Ekesi, Adnan A. K. Alrubaye

published 05 Jul 2023

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Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis

Anuraj Nayarisseri, Sanjeev Kumar Singh

published 02 Jun 2023

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Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models

Arianna Consiglio, Marco Venturin, Sabrina Briguglio, Clara Rossi, Giorgio Grillo, Stefano Bellosta, Maria Grazia Cattaneo, Flavio Licciulli, Cristina Battaglia

published 30 May 2023

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Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, Felicidad Fernandéz Fernandéz, Helen J. Bates, Samantha Lynn, Charlotte F. Nellist, Matteo Buti, Dag Røen, Nada Šurbanovski, Muath Alsheikh, Richard J. Harrison, Daniel James Sargent

published 16 May 2023

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Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis

Sanzhar Naizabekov, Seung Woon Hyun, Jeong-Geol Na, Sukhwan Yoon, Ok Kyung Lee, Eun Yeol Lee

published 10 May 2023

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