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Genome annotation

Phased chromosome-scale genome assembly of an asexual, allopolyploid root-knot nematode reveals complex subgenomic structure

Michael R. Winter, Adam P. Taranto, Henok Zemene Yimer, Alison Coomer Blundell, Shahid Siddique, Valerie M. Williamson, David H. Lunt

published 06 Jun 2024

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Functional classes of SNPs related to psychiatric disorders and behavioral traits contrast with those related to neurological disorders

Mark A. Reimers, Kenneth S. Kendler

published 16 May 2024

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Annotation of nuclear lncRNAs based on chromatin interactions

Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A. Ramilowski, Andrey I. Sigorskikh, Lisa J. Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M. Hoffman, Chikashi Terao, Ivan V. Kulakovskiy, Takeya Kasukawa, Jay W. Shin, Piero Carninci, Michiel J. L. de Hoon

published 06 May 2024

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Characterization of microsatellite markers in the coding regions of the Penaeus vannamei genome

Iasmim Santos Mangabeira-Silva, Paulo Eduardo Toscano Soares, Yago Tomaz Vieira da Silva, Beatriz Helena Dantas Rodrigues de Albuquerque, Maryana Thalyta Ferreira Câmera de Oliveira, Larissa Alves Honorato Ferreira, Maria Fernanda Bezerra de Souza, Danyllo Vieira de Lucena, Jessica Marina Paiva Pereira, Roseli Pimentel Pinheiro e Silva, Daniel Carlos Ferreira Lanza

published 02 May 2024

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Identification of differentially expressed mRNA/lncRNA modules in acutely regorafenib-treated sorafenib-resistant Huh7 hepatocellular carcinoma cells

Mina Baek, Minjae Kim, Hae In Choi, Bert Binas, Junho Cha, Kyoung Hwa Jung, Sungkyoung Choi, Young Gyu Chai

published 11 Apr 2024

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Genetic linkage mapping and quantitative trait locus (QTL) analysis of sweet basil (Ocimum basilicum L.) to identify genomic regions associated with cold tolerance and major volatiles

Lara J. Brindisi, Robert Mattera III, Sonika Mudiyala, Joshua Honig, James E. Simon

published 09 Apr 2024

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CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing

Sijia Xu, Hiroki Shiomi, Yugo Yamashita, Satoshi Koyama, Takahiro Horie, Osamu Baba, Masahiro Kimura, Yasuhiro Nakashima, Naoya Sowa, Koji Hasegawa, Ayako Suzuki, Yutaka Suzuki, Takeshi Kimura, Koh Ono

published 20 Mar 2024

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Isolation, whole-genome sequencing, and annotation of two antibiotic-producing and antibiotic-resistant bacteria, Pantoea rodasii RIT 836 and Pseudomonas endophytica RIT 838, collected from the environment

Serena Tuytschaevers, Leila Aden, Zacchaeus Greene, Chanei Nixon, Wade Shaw, Dillan Hatch, Girish Kumar, Renata Rezende Miranda, André O. Hudson

published 27 Feb 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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KIPEs3: Automatic annotation of biosynthesis pathways

Andreas Rempel, Nancy Choudhary, Boas Pucker

published 16 Nov 2023

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Molecular signature to predict quality of life and survival with glioblastoma using Multiview omics model

Rayan Nassani, Yahya Bokhari, Bahauddeen M. Alrfaei

published 16 Nov 2023

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De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis

Sen Liu, Gongxiu He, Gongliang Xie, Yamei Gong, Ninghua Zhu, Can Xiao

published 02 Nov 2023

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