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Genome annotation

Genetic linkage mapping and quantitative trait locus (QTL) analysis of sweet basil (Ocimum basilicum L.) to identify genomic regions associated with cold tolerance and major volatiles

Lara J. Brindisi, Robert Mattera III, Sonika Mudiyala, Joshua Honig, James E. Simon

published 09 Apr 2024

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CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing

Sijia Xu, Hiroki Shiomi, Yugo Yamashita, Satoshi Koyama, Takahiro Horie, Osamu Baba, Masahiro Kimura, Yasuhiro Nakashima, Naoya Sowa, Koji Hasegawa, Ayako Suzuki, Yutaka Suzuki, Takeshi Kimura, Koh Ono

published 20 Mar 2024

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Isolation, whole-genome sequencing, and annotation of two antibiotic-producing and antibiotic-resistant bacteria, Pantoea rodasii RIT 836 and Pseudomonas endophytica RIT 838, collected from the environment

Serena Tuytschaevers, Leila Aden, Zacchaeus Greene, Chanei Nixon, Wade Shaw, Dillan Hatch, Girish Kumar, Renata Rezende Miranda, André O. Hudson

published 27 Feb 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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KIPEs3: Automatic annotation of biosynthesis pathways

Andreas Rempel, Nancy Choudhary, Boas Pucker

published 16 Nov 2023

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Molecular signature to predict quality of life and survival with glioblastoma using Multiview omics model

Rayan Nassani, Yahya Bokhari, Bahauddeen M. Alrfaei

published 16 Nov 2023

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De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis

Sen Liu, Gongxiu He, Gongliang Xie, Yamei Gong, Ninghua Zhu, Can Xiao

published 02 Nov 2023

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A web-based platform for the annotation and analysis of NAR-published databases

Marcel Friedrichs, Cassandra Königs

published 23 Oct 2023

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Genome-based metabolic and phylogenomic analysis of three Terrisporobacter species

Tim Böer, Frank R. Bengelsdorf, Mechthild Bömeke, Rolf Daniel, Anja Poehlein

published 10 Oct 2023

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Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks

Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Johan S. Piña, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Luis Castillo-Ossa, Gustavo Isaza, Romain Guyot

published 21 Sep 2023

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Comprehensive transcriptomic analysis of long non-coding RNAs in bovine ovarian follicles and early embryos

Pengmin Wang, Éric R. Paquet, Claude Robert

published 19 Sep 2023

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Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, Eric I. Tong, Yvonne L. Chan, Nabeeh A. Hasan, Stephanie N. Dawrs, Grant J. Norton, Ravleen Virdi, James L. Crooks, Edward D. Chan, Jennifer R. Honda, Michael Strong

published 13 Sep 2023

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