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Genome annotation

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, [ ... ], Richard W. Tothill

Prediction and Quantification of Splice Events from RNA-Seq Data

Leonard D. Goldstein, Yi Cao, [ ... ], Robert Gentleman

NMD Classifier: A reliable and systematic classification tool for nonsense-mediated decay events

Min-Kung Hsu, Hsuan-Yu Lin, Feng-Chi Chen

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip^® for Methylome Profiling

Christine Clark, Priit Palta, [ ... ], Alison J. Coffey

Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements

Rajiv C. McCoy, Ryan W. Taylor, [ ... ], Anna-Sophie Fiston-Lavier

Crowd Sourcing a New Paradigm for Interactome Driven Drug Target Identification in Mycobacterium tuberculosis

Rohit Vashisht, Anupam Kumar Mondal, [ ... ], Anshu Bhardwaj

CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation

Chin-Sheng Yu, Chih-Wen Cheng, [ ... ], Chih-Hao Lu

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

Rahul C. Bhoyar, Abhinav Jain, [ ... ], Sridhar Sivasubbu

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

Dario Cantu, Manjula Govindarajulu, [ ... ], Jorge Dubcovsky

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Marc P. Hoeppner, Andrew Lundquist, [ ... ], Manfred G. Grabherr

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Thomas Nordahl Petersen, Oksana Lukjancenko, [ ... ], Thomas Sicheritz-Pontén

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

Kevin L. Childs, Rebecca M. Davidson, C. Robin Buell

BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

Pablo Pareja-Tobes, Marina Manrique, [ ... ], Raquel Tobes

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