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Genome annotation

Double triage to identify poorly annotated genes in maize: The missing link in community curation

Marcela K. Tello-Ruiz, Cristina F. Marco, [ ... ], David A. Micklos

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, [ ... ], Gustavo C. Cerqueira

uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

Anica Scholz, Florian Eggenhofer, [ ... ], Tobias Schmid

Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation

Mariângela B. C. Maldonado, Nelson B. de Rezende Neto, [ ... ], Flavia L. Lopes

Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies

Giltae Song, Jongin Lee, [ ... ], Jaebum Kim

Understanding evolution in Poales: Insights from Eriocaulaceae plastome

Ashwini M. Darshetkar, Mandar N. Datar, [ ... ], Ritesh Kumar Choudhary

Whole genome sequencing and rare variant analysis in essential tremor families

Zagaa Odgerel, Shilpa Sonti, [ ... ], Lorraine N. Clark

Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains

Abraham Guerrero, Alexei Fedorovish Licea-Navarro, Ricardo González-Sánchez, Marcial Leonardo Lizárraga-Partida

Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics

Lisa Imrie, Thierry Le Bihan, [ ... ], Samuel S. C. Rund

Closing target trimming and CTTdocker programs for discovering hidden superfamily loci in genomes

Zhihua Hua, Matthew J. Early

Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

Christophe Guyeux, Jean-Claude Charr, [ ... ], Perla Hamon

A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set

Boas Pucker, Daniela Holtgräwe, [ ... ], Bernd Weisshaar

Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis

Ievgeniia A. Tiukova, Mats E. Pettersson, [ ... ], Volkmar Passoth

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