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Genome annotation

Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni)

Elena Ruggeri, Julien Prunier, Marc-André Sirard, Barbara Durrant, Kristin Klohonatz

published 05 Jan 2026

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Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, Christof A. Bertram, Josien P. W. Pluim, Mitko Veta

published 05 Dec 2025

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Bacimethrin, an allelopathic vitamin B₁ antagonist, is linked with microbial gene expression patterns in a hypereutrophic watershed

Kelly C. Shannon, Frederick S. Colwell, Byron C. Crump, Elizabeth Brennan, Gillian St. John, Robin Gould, Christopher Hartzell, McKenzie Wasley, Christie Nichols, Clifford E. Kraft, Christopher P. Suffridge

published 21 Nov 2025

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Harnessing genetic diversity: The genomic and transcriptomic insights of Eugenia uniflora for environmental resilience

Isabel Cristina Cadavid Sánchez, Edgar L. Waschburger, Rita M.C. de Almeida, Alexandre Nascimento de Vargas, Guilherme Loss de Morais, Jimena Giraldo Flores, Dámaris Esquén Bayona, Rogerio Margis, Andreia Carina Turchetto-Zolet, Frank Lino Guzman Escudero

published 04 Nov 2025

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The genome of Gallaecimonas pentaromativorans strain 10A, isolated from a Pacific oyster, sheds light on an environmentally widespread genus with remarkable metabolic potential

Yasmine Gouin, Adam Wilcockson, Amy M. Chan, Curtis A. Suttle, Kevin Xu Zhong

published 21 Oct 2025

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Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

published 16 Oct 2025

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OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Identification of differentially expressed genes and proteins related to diapause in Lymantria dispar: Insights for the mechanism of diapause from transcriptome and proteome analyses

Qing Xie, Xiaofan Ma, Yafei Li, Wenzhuai Ji, Fengrui Dou, Xiue Zhu, Juan Shi, Yixia Cao

published 25 Jun 2025

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Morphological traits and machine learning for genetic lineage prediction of two reef-building corals

Guinther Mitushasi, Yuko F. Kitano, Nicolas Oury, Hélène Magalon, David A. Paz-García, Eric Armstrong, Benjamin C. C. Hume, Barbara Porro, Clémentine Moulin, Emilie Boissin, Guillaume Bourdin, Guillaume Iwankow, Julie Poulain, Sarah Romac, Maggie M. Reddy, Tara Pacific Consortium Coordinators , Serge Planes, Denis Allemand, Christian R. Voolstra, Didier Forcioli, Sylvain Agostini

published 18 Jun 2025

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Phenome-wide association study and functional annotation of hemoglobin A1c-associated variants in African populations

Chisom Soremekun, Oyesola Ojewunmi, Amarachukwu Nwagbata, Homa Bazireh, Sapna Sharma, Daudi Jjingo, David Patrick Kateete, Oyekanmi Nash, Harald Grallert, Chiara Batini, Annette Peters, Segun Fatumo

published 30 May 2025

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Needle in a haystack: Coarse-to-fine alignment network for moment retrieval from large-scale video collections

Lingwen Meng, Fangyuan Liu, Mingyong Xin, Siqi Guo, Fu Zou

published 15 May 2025

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Some molecular aspects of larval development in Paralithodes camtschaticus

Alexey V. Boyko, Igor Yu. Dolmatov, Alexander S. Girich, Sergey I. Maslennikov

published 29 Apr 2025

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