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Fungal genomics

Phage-plasmid-like elements are found throughout diverse environments and encode niche-specific functional traits

James I. Mullet, Liqing Zhang, Amy Pruden, Connor L. Brown

published 29 May 2026

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Genome-wide analysis of the invasive fungal pathogen Neopestalotiopsis reveals high genomic diversity, effector repertoires, and the assessment of fungicide resistance risks

Tika B. Adhikari, Norman Muzhinji, Susmita Gaire, Prem B. Magar, Anju Pandey, Swarnalatha Moparthi, Frank J. Louws

published 27 May 2026

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Comparative genomics-based development of a LAMP assay for rapid and reliable in-field detection of Fusarium oxysporum f. sp. cubense tropical race 4

Mikel Arrieta Salgado, Diane Mostert, Sebastien Ravel, Samuel Rozsasi, Veronique Maillot-Lebon, Agus Sutanto, Catur Hermanto, Mouzdalifa Mmadi, Abdou Azali Hamza, Nadia Adjanoh-Lubin, Babitha Fenelon, Henri Adreit, Sandrine Fabre, Beatrix Coetzee, J. Jansen van Vuuren, Sheryl Le Roux, Altus Viljoen, Yolande Chilin-Charles, Jean Carlier, Camilo Gianinazzi, Emmanuel Wicker, Isabelle Robène

published 29 Apr 2026

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Development of a multiplex ddPCR assay for simultaneous absolute quantification of bacterial, fungal, and human DNA

Guohong Huang, Torrey L. Gallagher, Gregory J. Tsongalis, Joel A. Lefferts

published 20 Feb 2026

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Multi-locus phylogenetic network analysis of Ampelomyces mycoparasites isolated from diverse powdery mildews in Australia and the generation of two de novo genome assemblies

Lauren Goldspink, Alexandros G. Sotiropoulos, Alexander Idnurm, Gavin J. Ash, John D. W. Dearnaley, Morwenna Boddington, Aftab Ahmad, Márk Z. Németh, Alexandra Pintye, Markus Gorfer, Hyeon-Dong Shin, Gábor M. Kovács, Niloofar Vaghefi, Levente Kiss

published 04 Dec 2025

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High-Resolution Melting assays development for discrimination of fungal pathogens causing Grapevine Trunk Diseases

Filipe Azevedo-Nogueira, Ana Gaspar, Sara Barrias, Bruna Costa, Beatriz Silva, Cecília Rego, Paula Martins-Lopes

published 01 Dec 2025

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Genome sequencing and analysis of isolates of Cytospora sorbicola and Cytospora plurivora associated with almond and peach canker

Tawanda E. Maguvu, Rosa J. Frias, Florent P. Trouillas

published 17 Oct 2025

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Genomic characterization and fermentation study of the endophyte Stemphylium sp. (Aa22), a producer of bioactive alkyl-resorcinols

Jorge Rojas López-Menchero, Juan Imperial, Maria Fe Andrés, Carmen Elisa Díaz, Azucena González-Coloma

published 17 Sep 2025

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A novel mitovirus associated with the fungal entomopathogen Zoophthora radicans

Meaghan J. Adler, McKayla M. Martin, Paula Rozo-Lopez, Benjamin J. Parker

published 05 Sep 2025

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Virus and viroid diversity in hops, investigating the German hop virome

Ali Pasha, Gritta Schrader, Heiko Ziebell

published 07 Aug 2025

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Discovery of novel targets for important human and plant fungal pathogens via an automated computational pipeline HitList

David E. Condon, Brenda K. Schroeder, Paul A. Rowley, F. Marty Ytreberg

published 03 Jun 2025

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Production of the light-activated elsinochrome phytotoxin in the soybean pathogen Coniothyrium glycines hints at virulence factor

Nicholas Greatens, Harun M. Murithi, Danny Coyne, Steven J. Clough, Michael Sulyok, Wahab Oluwanisola Okunowo, Hamed K. Abbas, W. Thomas Shier, Rachel A. Koch Bach

published 13 May 2025

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Variation in SSRs at different genomic regions and implications for the evolution and identification of Armillaria gallica

Shengnan Li, Jiao Xu, Yipu Hu, Xiaohong Ou, Qingsong Yuan, Pengfei Li, Weike Jiang, Lanping Guo, Tao Zhou

published 15 Oct 2024

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