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Functional genomics

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

Bart H. J. van den Berg, Fiona M. McCarthy, Susan J. Lamont, Shane C. Burgess

Antigen Diversity in the Parasitic Bacterium Anaplasma phagocytophilum Arises from Selectively-Represented, Spatially Clustered Functional Pseudogenes

Janet E. Foley, Nathan C. Nieto, Anthony Barbet, Patrick Foley

Complete Genome Sequence of Francisella tularensis Subspecies holarctica FTNF002-00

Ravi D. Barabote, Gary Xie, [ ... ], Michael P. Dempsey

Analysis of Functional Genomic Signals Using the XOR Gate

Mahesh Yaragatti, Qi Wen

Compositional Genome Contexts Affect Gene Expression Control in Sea Urchin Embryo

Abdullah Al Mahmud, Gabriele Amore, Giorgio Bernardi

Modeling the Fitness Consequences of a Cyanophage-Encoded Photosynthesis Gene

Jason G. Bragg, Sallie W. Chisholm

Orthologous MicroRNA Genes Are Located in Cancer-Associated Genomic Regions in Human and Mouse

Igor V. Makunin, Michael Pheasant, Cas Simons, John S. Mattick

Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes

Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos

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