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DNA libraries

A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data

Xiaohong Li, Guy N. Brock, [ ... ], Shesh N. Rai

Increased Throughput by Parallelization of Library Preparation for Massive Sequencing

Sverker Lundin, Henrik Stranneheim, [ ... ], Joakim Lundeberg

RAPID-SELEX for RNA Aptamers

Kylan Szeto, David R. Latulippe, [ ... ], Harold G. Craighead

Small RNA Deep Sequencing Reveals Role for Arabidopsis thaliana RNA-Dependent RNA Polymerases in Viral siRNA Biogenesis

Xiaopeng Qi, Forrest Sheng Bao, Zhixin Xie

Quantitative Bias in Illumina TruSeq and a Novel Post Amplification Barcoding Strategy for Multiplexed DNA and Small RNA Deep Sequencing

Filip Van Nieuwerburgh, Sandra Soetaert, [ ... ], Phillip Ordoukhanian

How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq

Luis Fernando García-Ortega, Octavio Martínez

Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes

Carlos García-Robledo, David L. Erickson, [ ... ], W. John Kress

Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells

Ya-Mei Wang, Ping Zhou, [ ... ], Yu-Xiang Zhang

Amplification of overlapping DNA amplicons in a single-tube multiplex PCR for targeted next-generation sequencing of BRCA1 and BRCA2

Desiree Schenk, Gang Song, Yue Ke, Zhaohui Wang

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

Andaine Seguin-Orlando, Mikkel Schubert, [ ... ], Ludovic Orlando

Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data

Richard W. Lusk

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

Susanna Sawyer, Johannes Krause, [ ... ], Svante Pääbo

Glyoxal fixation facilitates transcriptome analysis after antigen staining and cell sorting by flow cytometry

Prasanna Channathodiyil, Jonathan Houseley

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