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DNA libraries

Increased Throughput by Parallelization of Library Preparation for Massive Sequencing

Sverker Lundin, Henrik Stranneheim, [ ... ], Joakim Lundeberg

A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data

Xiaohong Li, Guy N. Brock, [ ... ], Shesh N. Rai

RAPID-SELEX for RNA Aptamers

Kylan Szeto, David R. Latulippe, [ ... ], Harold G. Craighead

Small RNA Deep Sequencing Reveals Role for Arabidopsis thaliana RNA-Dependent RNA Polymerases in Viral siRNA Biogenesis

Xiaopeng Qi, Forrest Sheng Bao, Zhixin Xie

Quantitative Bias in Illumina TruSeq and a Novel Post Amplification Barcoding Strategy for Multiplexed DNA and Small RNA Deep Sequencing

Filip Van Nieuwerburgh, Sandra Soetaert, [ ... ], Phillip Ordoukhanian

How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq

Luis Fernando García-Ortega, Octavio Martínez

Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells

Ya-Mei Wang, Ping Zhou, [ ... ], Yu-Xiang Zhang

Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes

Carlos García-Robledo, David L. Erickson, [ ... ], W. John Kress

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

Andaine Seguin-Orlando, Mikkel Schubert, [ ... ], Ludovic Orlando

Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data

Richard W. Lusk

Amplification of overlapping DNA amplicons in a single-tube multiplex PCR for targeted next-generation sequencing of BRCA1 and BRCA2

Desiree Schenk, Gang Song, Yue Ke, Zhaohui Wang

Characterization of the Melanoma miRNAome by Deep Sequencing

Mitchell S. Stark, Sonika Tyagi, [ ... ], Nicholas K. Hayward

Evaluation of commercial DNA and RNA extraction methods for high-throughput sequencing of FFPE samples

Stine H. Kresse, Heidi M. Namløs, [ ... ], Leonardo A. Meza-Zepeda

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