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Database and informatics methods

Contribution of Exogenous Genetic Elements to the Group A Streptococcus Metagenome

Stephen B. Beres, James M. Musser

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

Morten Nielsen, Claus Lundegaard, [ ... ], Søren Buus

Simple Sequence Repeats Provide a Substrate for Phenotypic Variation in the Neurospora crassa Circadian Clock

Todd P. Michael, Sohyun Park, [ ... ], Kwangwon Lee

Phylogenomics Reshuffles the Eukaryotic Supergroups

Fabien Burki, Kamran Shalchian-Tabrizi, [ ... ], Jan Pawlowski

A Dimer of the Toll-Like Receptor 4 Cytoplasmic Domain Provides a Specific Scaffold for the Recruitment of Signalling Adaptor Proteins

Ricardo Núñez Miguel, Joyce Wong, [ ... ], Tom P. Monie

Expressed Sequence Tags as a Tool for Phylogenetic Analysis of Placental Mammal Evolution

Morgan Kullberg, Björn Hallström, Ulfur Arnason, Axel Janke

Yersinia pestis Evolution on a Small Timescale: Comparison of Whole Genome Sequences from North America

Raymond K. Auerbach, Apichai Tuanyok, [ ... ], Paul Keim

The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

Sven Heinicke, Michael S. Livstone, [ ... ], Kara Dolinski

Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics

Hervé Philippe, Henner Brinkmann, [ ... ], Jaume Baguñà

Mammalian Comparative Sequence Analysis of the Agrp Locus

Christopher B. Kaelin, Gregory M. Cooper, Arend Sidow, Gregory S. Barsh

Mutations in the UBIAD1 Gene, Encoding a Potential Prenyltransferase, Are Causal for Schnyder Crystalline Corneal Dystrophy

Andrew Orr, Marie-Pierre Dubé, [ ... ], Mark Samuels

A Framework for Exploring Functional Variability in Olfactory Receptor Genes

Orna Man, David C. Willhite, [ ... ], Yoav Gilad

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