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Database and informatics methods

Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes

Gareth A. Wilson, Edward J. Feil, Andrew K. Lilley, Dawn Field

Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome

Lei Li, Xiangfeng Wang, [ ... ], Xing Wang Deng

Tetrahymena Metallothioneins Fall into Two Discrete Subfamilies

Silvia Díaz, Francisco Amaro, [ ... ], Juan C. Gutiérrez

Transient Receptor Potential Ion Channels Control Thermoregulatory Behaviour in Reptiles

Frank Seebacher, Shauna A. Murray

Adaptation of HIV-1 Depends on the Host-Cell Environment

Tim van Opijnen, Anthony de Ronde, Maarten C. Boerlijst, Ben Berkhout

Evidence for Active Maintenance of Inverted Repeat Structures Identified by a Comparative Genomic Approach

Guoyan Zhao, Kuan Y. Chang, Katherine Varley, Gary D. Stormo

Tentative Mapping of Transcription-Induced Interchromosomal Interaction using Chimeric EST and mRNA Data

Per Unneberg, Jean-Michel Claverie

High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Noah Fahlgren, Miya D. Howell, [ ... ], James C. Carrington

The Identification of Lymphocyte-Like Cells and Lymphoid-Related Genes in Amphioxus Indicates the Twilight for the Emergency of Adaptive Immune System

Gonghua Huang, Xiaojin Xie, [ ... ], Anlong Xu

Ancient Origin of the New Developmental Superfamily DANGER

Nikolas Nikolaidis, Dimitra Chalkia, [ ... ], Randen L. Patterson

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonas Binladen, M. Thomas P. Gilbert, [ ... ], Eske Willerslev

Biological Designer Self-Assembling Peptide Nanofiber Scaffolds Significantly Enhance Osteoblast Proliferation, Differentiation and 3-D Migration

Akihiro Horii, Xiumei Wang, Fabrizio Gelain, Shuguang Zhang

Insights into the Molecular Evolution of the PDZ/LIM Family and Identification of a Novel Conserved Protein Motif

Aartjan J.W. te Velthuis, Tadamoto Isogai, Lieke Gerrits, Christoph P. Bagowski

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