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Database and informatics methods

Genome-Wide Identification of Alternatively Spliced mRNA Targets of Specific RNA-Binding Proteins

Mark D. Robida, Andrew Rahn, Ravinder Singh

Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, [ ... ], Cheryl Y. Hayashi

Pathogen Proteins Eliciting Antibodies Do Not Share Epitopes with Host Proteins: A Bioinformatics Approach

Isaac Amela, Juan Cedano, Enrique Querol

A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

W. John Kress, David L. Erickson

HIV-Specific Probabilistic Models of Protein Evolution

David C. Nickle, Laura Heath, [ ... ], Sergei L. Kosakovsky Pond

The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network

Duygu Balcan, Alkan Kabakçıoğlu, Muhittin Mungan, Ayşe Erzan

Hormone-Mediated Gene Regulation and Bioinformatics: Learning One from the Other

João Carlos Sousa, Manuel João Costa, Joana Almeida Palha

A Novel Motif Identified in Dependence Receptors

Gabriel del Rio, Darci J. Kane, Keith D. Ball, Dale E. Bredesen

MamuSNP: A Resource for Rhesus Macaque (Macaca mulatta) Genomics

Ripan S. Malhi, Brad Sickler, [ ... ], David Glenn Smith

Transcriptome of Pneumocystis carinii during Fulminate Infection: Carbohydrate Metabolism and the Concept of a Compatible Parasite

Melanie T. Cushion, A. George Smulian, [ ... ], Jarek Meller

Efficient Identification of Critical Residues Based Only on Protein Structure by Network Analysis

Michael P. Cusack, Boris Thibert, Dale E. Bredesen, Gabriel del Rio

Searching for Tissue-Specific Expression Pattern-Linked Nucleotides of UGT1A Isoforms

Wei Zhang, Wanqing Liu, Federico Innocenti, Mark J. Ratain

Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes

Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos

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