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Database and informatics methods

Early Evolution of Ionotropic GABA Receptors and Selective Regimes Acting on the Mammalian-Specific Theta and Epsilon Subunits

Christopher J. Martyniuk, Stéphane Aris-Brosou, [ ... ], Vance L. Trudeau

Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

Sunhwan Jo, Taehoon Kim, Wonpil Im

Structural and Functional Analyses of Five Conserved Positively Charged Residues in the L1 and N-Terminal DNA Binding Motifs of Archaeal RadA Protein

Li-Tzu Chen, Tzu-Ping Ko, [ ... ], Ting-Fang Wang

Wide-Scale Analysis of Human Functional Transcription Factor Binding Reveals a Strong Bias towards the Transcription Start Site

Yuval Tabach, Ran Brosh, [ ... ], Eytan Domany

Contribution of Exogenous Genetic Elements to the Group A Streptococcus Metagenome

Stephen B. Beres, James M. Musser

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

Morten Nielsen, Claus Lundegaard, [ ... ], Søren Buus

Simple Sequence Repeats Provide a Substrate for Phenotypic Variation in the Neurospora crassa Circadian Clock

Todd P. Michael, Sohyun Park, [ ... ], Kwangwon Lee

Phylogenomics Reshuffles the Eukaryotic Supergroups

Fabien Burki, Kamran Shalchian-Tabrizi, [ ... ], Jan Pawlowski

A Dimer of the Toll-Like Receptor 4 Cytoplasmic Domain Provides a Specific Scaffold for the Recruitment of Signalling Adaptor Proteins

Ricardo Núñez Miguel, Joyce Wong, [ ... ], Tom P. Monie

Expressed Sequence Tags as a Tool for Phylogenetic Analysis of Placental Mammal Evolution

Morgan Kullberg, Björn Hallström, Ulfur Arnason, Axel Janke

Yersinia pestis Evolution on a Small Timescale: Comparison of Whole Genome Sequences from North America

Raymond K. Auerbach, Apichai Tuanyok, [ ... ], Paul Keim

The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

Sven Heinicke, Michael S. Livstone, [ ... ], Kara Dolinski

Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

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