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Database and informatics methods

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

published 01 Jun 2009

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Transcriptome-Wide Prediction of miRNA Targets in Human and Mouse Using FASTH

Chikako Ragan, Nicole Cloonan, Sean M. Grimmond, Michael Zuker, Mark A. Ragan

published 29 May 2009

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HIV-1 Superinfection in the Antiretroviral Therapy Era: Are Seroconcordant Sexual Partners at Risk?

Mary S. Campbell, Geoffrey S. Gottlieb, Stephen E. Hawes, David C. Nickle, Kim G. Wong, Wenjie Deng, Thomas M. Lampinen, Nancy B. Kiviat, James I. Mullins

published 28 May 2009

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Codon Size Reduction as the Origin of the Triplet Genetic Code

Pavel V. Baranov, Maxime Venin, Gregory Provan

published 27 May 2009

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A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, Shashidhar Rao, Yogesh Hooda, Suyog Pol

published 27 May 2009

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Regulatory Elements within the Prodomain of Falcipain-2, a Cysteine Protease of the Malaria Parasite Plasmodium falciparum

Kailash C. Pandey, David T. Barkan, Andrej Sali, Philip J. Rosenthal

published 27 May 2009

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Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien-Chi Lo, Thomas Leitner, Brian Gaschen, James Theiler, Roger Paredes, Zhaohui Su, Michael D. Hughes, Roy M. Gulick, Wayne Greaves, Eoin Coakley, Charles Flexner, Chad Nusbaum, Daniel R. Kuritzkes

published 25 May 2009

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Sequence Conservation in Plasmodium falciparum α-Helical Coiled Coil Domains Proposed for Vaccine Development

Caroline Kulangara, Andrey V. Kajava, Giampietro Corradin, Ingrid Felger

published 25 May 2009

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A New Family of Receptor Tyrosine Kinases with a Venus Flytrap Binding Domain in Insects and Other Invertebrates Activated by Aminoacids

Arnaud Ahier, Philippe Rondard, Nadège Gouignard, Naji Khayath, Siluo Huang, Jacques Trolet, Daniel J. Donoghue, Monique Gauthier, Jean-Philippe Pin, Colette Dissous

published 21 May 2009

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Prospective Identification of Malaria Parasite Genes under Balancing Selection

Kevin K. A. Tetteh, Lindsay B. Stewart, Lynette Isabella Ochola, Alfred Amambua-Ngwa, Alan W. Thomas, Kevin Marsh, Gareth D. Weedall, David J. Conway

published 15 May 2009

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Using Classical Population Genetics Tools with Heterochroneous Data: Time Matters!

Frantz Depaulis, Ludovic Orlando, Catherine Hänni

published 14 May 2009

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An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang

published 12 May 2009

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Bioavailability of Orally Administered rhGM-CSF: A Single-Dose, Randomized, Open-Label, Two-Period Crossover Trial

Wenping Zhang, Zhengbing Lv, Zuoming Nie, Guogang Chen, Jian Chen, Qing Sheng, Wei Yu, Yongfeng Jin, Xiangfu Wu, Yaozhou Zhang

published 12 May 2009

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