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Database and informatics methods

Evolutionary Emergence of microRNAs in Human Embryonic Stem Cells

Hong Cao, Chao-shun Yang, Tariq M. Rana

published 30 Jul 2008

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Sequence Relationships among C. elegans, D. melanogaster and Human microRNAs Highlight the Extensive Conservation of microRNAs in Biology

Carolina Ibáñez-Ventoso, Mehul Vora, Monica Driscoll

published 30 Jul 2008

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Conserved Secondary Structures in Aspergillus

Abigail Manson McGuire, James E. Galagan

published 30 Jul 2008

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Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

Aron J. Fazekas, Kevin S. Burgess, Prasad R. Kesanakurti, Sean W. Graham, Steven G. Newmaster, Brian C. Husband, Diana M. Percy, Mehrdad Hajibabaei, Spencer C. H. Barrett

published 30 Jul 2008

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Comparative 3'UTR Analysis Allows Identification of Regulatory Clusters that Drive Eph/ephrin Expression in Cancer Cell Lines

Jennifer Winter, Stefan Roepcke, Sven Krause, Eva-Christina Müller, Albrecht Otto, Martin Vingron, Susann Schweiger

published 23 Jul 2008

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Seasonality of Influenza A(H3N2) Virus: A Hong Kong Perspective (1997–2006)

Julian W. Tang, Karry L. K. Ngai, Wai Y. Lam, Paul K. S. Chan

published 23 Jul 2008

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Targeted Development of Registries of Biological Parts

Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, Kristal L. Cooper, Oswald Crasta, Emily C. DeLalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, Sally A. Waldon

published 16 Jul 2008

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The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms

Jayabalan M. Joseph, Petra Fey, Nagendran Ramalingam, Xiao I. Liu, Meino Rohlfs, Angelika A. Noegel, Annette Müller-Taubenberger, Gernot Glöckner, Michael Schleicher

published 09 Jul 2008

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Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees

Leonardo de Oliveira Martins, Élcio Leal, Hirohisa Kishino

published 09 Jul 2008

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Local Alignment Refinement Using Structural Assessment

Pierre Chodanowski, Aurélien Grosdidier, Ernest Feytmans, Olivier Michielin

published 09 Jul 2008

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Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes

Laurie A. Graham, Stephen C. Lougheed, K. Vanya Ewart, Peter L. Davies

published 09 Jul 2008

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CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

Mridul K. Kalita, Umesh K. Nandal, Ansuman Pattnaik, Anandhan Sivalingam, Gowthaman Ramasamy, Manish Kumar, Gajendra P. S. Raghava, Dinesh Gupta

published 02 Jul 2008

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An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

published 02 Jul 2008

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