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Database and informatics methods

Transitions at CpG Dinucleotides, Geographic Clustering of TP53 Mutations and Food Availability Patterns in Colorectal Cancer

Fabio Verginelli, Faraz Bishehsari, Francesco Napolitano, Mahboobeh Mahdavinia, Alessandro Cama, Reza Malekzadeh, Gennaro Miele, Giancarlo Raiconi, Roberto Tagliaferri, Renato Mariani-Costantini

published 31 Aug 2009

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A Dedicated Promoter Drives Constitutive Expression of the Cell-Autonomous Immune Resistance GTPase, Irga6 (IIGP1) in Mouse Liver

Jia Zeng, Iana Angelova Parvanova, Jonathan C. Howard

published 26 Aug 2009

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Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

published 26 Aug 2009

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Modeling the Quantitative Specificity of DNA-Binding Proteins from Example Binding Sites

Dana S. F. Homsi, Vineet Gupta, Gary D. Stormo

published 25 Aug 2009

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Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, Qiong Wang, Janne Nikkilä, Julian R. Marchesi, Hauke Smidt, Willem M. de Vos, R. Paul Ross, Paul W. O'Toole

published 20 Aug 2009

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Missing Data in Randomized Clinical Trials for Weight Loss: Scope of the Problem, State of the Field, and Performance of Statistical Methods

Mai A. Elobeid, Miguel A. Padilla, Theresa McVie, Olivia Thomas, David W. Brock, Bret Musser, Kaifeng Lu, Christopher S. Coffey, Renee A. Desmond, Marie-Pierre St-Onge, Kishore M. Gadde, Steven B. Heymsfield, David B. Allison

published 13 Aug 2009

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Integrated Expression Profiling and ChIP-seq Analyses of the Growth Inhibition Response Program of the Androgen Receptor

Biaoyang Lin, Jun Wang, Xu Hong, Xiaowei Yan, Daehee Hwang, Ji-Hoon Cho, Danielle Yi, Angelita G. Utleg, Xuefeng Fang, Dustin E. Schones, Keji Zhao, Gilbert S. Omenn, Leroy Hood

published 11 Aug 2009

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The Evolution of the Major Hepatitis C Genotypes Correlates with Clinical Response to Interferon Therapy

Phillip S. Pang, Paul J. Planet, Jeffrey S. Glenn

published 11 Aug 2009

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Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, Mitchell E. Skinner, Yuri R. Bendaña, Lars Barquist, Ian Holmes

published 11 Aug 2009

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Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

Antonio M. Ramos, Richard P. M. A. Crooijmans, Nabeel A. Affara, Andreia J. Amaral, Alan L. Archibald, Jonathan E. Beever, Christian Bendixen, Carol Churcher, Richard Clark, Patrick Dehais, Mark S. Hansen, Jakob Hedegaard, Zhi-Liang Hu, Hindrik H. Kerstens, Andy S. Law, Hendrik-Jan Megens, Denis Milan, Danny J. Nonneman, Gary A. Rohrer, Max F. Rothschild, Tim P. L. Smith, Robert D. Schnabel, Curt P. Van Tassell, Jeremy F. Taylor, Ralph T. Wiedmann, Lawrence B. Schook, Martien A. M. Groenen

published 05 Aug 2009

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Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes

Thomas Rolland, Cécile Neuvéglise, Christine Sacerdot, Bernard Dujon

published 05 Aug 2009

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Dominance of Objects over Context in a Mediotemporal Lobe Model of Schizophrenia

Lucia M. Talamini, Martijn Meeter

published 04 Aug 2009

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Coupling between Properties of the Protein Shape and the Rate of Protein Folding

Dmitry N. Ivankov, Natalya S. Bogatyreva, Michail Yu Lobanov, Oxana V. Galzitskaya

published 03 Aug 2009

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