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Database and informatics methods

Prediction and Experimental Validation of Novel STAT3 Target Genes in Human Cancer Cells

Young Min Oh, Jong Kyoung Kim, [ ... ], Joo-Yeon Yoo

Identifying Cis-Regulatory Sequences by Word Profile Similarity

Garmay Leung, Michael B. Eisen

The FunGenES Database: A Genomics Resource for Mouse Embryonic Stem Cell Differentiation

Herbert Schulz, Raivo Kolde, [ ... ], for the “Functional genomics in embryonic stem cells” Consortium

The dif/Xer Recombination Systems in Proteobacteria

Christophe Carnoy, Claude-Alain Roten

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

Transitions at CpG Dinucleotides, Geographic Clustering of TP53 Mutations and Food Availability Patterns in Colorectal Cancer

Fabio Verginelli, Faraz Bishehsari, [ ... ], Renato Mariani-Costantini

A Dedicated Promoter Drives Constitutive Expression of the Cell-Autonomous Immune Resistance GTPase, Irga6 (IIGP1) in Mouse Liver

Jia Zeng, Iana Angelova Parvanova, Jonathan C. Howard

Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

Modeling the Quantitative Specificity of DNA-Binding Proteins from Example Binding Sites

Dana S. F. Homsi, Vineet Gupta, Gary D. Stormo

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, [ ... ], Paul W. O'Toole

Missing Data in Randomized Clinical Trials for Weight Loss: Scope of the Problem, State of the Field, and Performance of Statistical Methods

Mai A. Elobeid, Miguel A. Padilla, [ ... ], David B. Allison

Integrated Expression Profiling and ChIP-seq Analyses of the Growth Inhibition Response Program of the Androgen Receptor

Biaoyang Lin, Jun Wang, [ ... ], Leroy Hood

The Evolution of the Major Hepatitis C Genotypes Correlates with Clinical Response to Interferon Therapy

Phillip S. Pang, Paul J. Planet, Jeffrey S. Glenn

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