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Database and informatics methods

An MHC-I Cytoplasmic Domain/HIV-1 Nef Fusion Protein Binds Directly to the μ Subunit of the AP-1 Endosomal Coat Complex

Rajendra Kumar Singh, David Lau, Colleen M. Noviello, Partho Ghosh, John C. Guatelli

published 18 Dec 2009

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Molecular Evolution of Drosophila Cuticular Protein Genes

R. Scott Cornman

published 17 Dec 2009

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Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis

Emmanuel Dias-Neto, Diana N. Nunes, Ricardo J. Giordano, Jessica Sun, Gregory H. Botz, Kuan Yang, João C. Setubal, Renata Pasqualini, Wadih Arap

published 17 Dec 2009

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A Biochemical Genomics Screen for Substrates of Ste20p Kinase Enables the In Silico Prediction of Novel Substrates

Robert B. Annan, Anna Y. Lee, Ian D. Reid, Azin Sayad, Malcolm Whiteway, Michael Hallett, David Y. Thomas

published 16 Dec 2009

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Bi-Directional SIFT Predicts a Subset of Activating Mutations

William Lee, Yan Zhang, Kiran Mukhyala, Robert A. Lazarus, Zemin Zhang

published 14 Dec 2009

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A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

published 14 Dec 2009

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Hepatitis C Virus (HCV) Genotype 1 Subtype Identification in New HCV Drug Development and Future Clinical Practice

Stéphane Chevaliez, Magali Bouvier-Alias, Rozenn Brillet, Jean-Michel Pawlotsky

published 08 Dec 2009

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PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors

Shu-Hwa Chen, Sheng-Yao Su, Chen-Zen Lo, Kuei-Hsien Chen, Teng-Jay Huang, Bo-Han Kuo, Chung-Yen Lin

published 07 Dec 2009

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Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

published 07 Dec 2009

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A Biophysical Model for Analysis of Transcription Factor Interaction and Binding Site Arrangement from Genome-Wide Binding Data

Xin He, Chieh-Chun Chen, Feng Hong, Fang Fang, Saurabh Sinha, Huck-Hui Ng, Sheng Zhong

published 01 Dec 2009

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The SNF2-Family Member Fun30 Promotes Gene Silencing in Heterochromatic Loci

Ana Neves-Costa, W. Ryan Will, Anna T. Vetter, J. Ross Miller, Patrick Varga-Weisz

published 01 Dec 2009

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Network Properties of Complex Human Disease Genes Identified through Genome-Wide Association Studies

Fredrik Barrenas, Sreenivas Chavali, Petter Holme, Reza Mobini, Mikael Benson

published 30 Nov 2009

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Survey of the Quality of Experimental Design, Statistical Analysis and Reporting of Research Using Animals

Carol Kilkenny, Nick Parsons, Ed Kadyszewski, Michael F. W. Festing, Innes C. Cuthill, Derek Fry, Jane Hutton, Douglas G. Altman

published 30 Nov 2009

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