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Database and informatics methods

Phylogenetic Analysis of the MS4A and TMEM176 Gene Families

Jonathan Zuccolo, Jeremy Bau, Sarah J. Childs, Greg G. Goss, Christoph W. Sensen, Julie P. Deans

published 23 Feb 2010

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Comprehensive Survey of SNPs in the Affymetrix Exon Array Using the 1000 Genomes Dataset

Eric R. Gamazon, Wei Zhang, M. Eileen Dolan, Nancy J. Cox

published 23 Feb 2010

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Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

Christina A. Bormann Chung, Victoria L. Boyd, Kevin J. McKernan, Yutao Fu, Cinna Monighetti, Heather E. Peckham, Melissa Barker

published 22 Feb 2010

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The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database

Abderrahmane Tagmount, Mei Wang, Erika Lindquist, Yoshihiro Tanaka, Kristen S. Teranishi, Shinichi Sunagawa, Mike Wong, Jonathon H. Stillman

published 19 Feb 2010

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Tumor Transcriptome Sequencing Reveals Allelic Expression Imbalances Associated with Copy Number Alterations

Brian B. Tuch, Rebecca R. Laborde, Xing Xu, Jian Gu, Christina B. Chung, Cinna K. Monighetti, Sarah J. Stanley, Kerry D. Olsen, Jan L. Kasperbauer, Eric J. Moore, Adam J. Broomer, Ruoying Tan, Pius M. Brzoska, Matthew W. Muller, Asim S. Siddiqui, Yan W. Asmann, Yongming Sun, Scott Kuersten, Melissa A. Barker, Francisco M. De La Vega, David I. Smith

published 19 Feb 2010

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Application Description and Policy Model in Collaborative Environment for Sharing of Information on Epidemiological and Clinical Research Data Sets

Elias César Araujo de Carvalho, Adelia Portero Batilana, Julie Simkins, Henrique Martins, Jatin Shah, Dimple Rajgor, Anand Shah, Scott Rockart, Ricardo Pietrobon

published 19 Feb 2010

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Complete Genome Sequence of Avian Paramyxovirus (APMV) Serotype 5 Completes the Analysis of Nine APMV Serotypes and Reveals the Longest APMV Genome

Arthur S. Samuel, Anandan Paldurai, Sachin Kumar, Peter L. Collins, Siba K. Samal

published 17 Feb 2010

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Large-Scale Sequence Analysis of Hemagglutinin of Influenza A Virus Identifies Conserved Regions Suitable for Targeting an Anti-Viral Response

Leepakshi Sahini, Anna Tempczyk-Russell, Ritu Agarwal

published 17 Feb 2010

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Structural and Functional Restraints on the Occurrence of Single Amino Acid Variations in Human Proteins

Sungsam Gong, Tom L. Blundell

published 12 Feb 2010

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The DIANA-mirExTra Web Server: From Gene Expression Data to MicroRNA Function

Panagiotis Alexiou, Manolis Maragkakis, Giorgio L. Papadopoulos, Victor A. Simmosis, Lin Zhang, Artemis G. Hatzigeorgiou

published 11 Feb 2010

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Monitoring Genomic Sequences during SELEX Using High-Throughput Sequencing: Neutral SELEX

Bob Zimmermann, Tanja Gesell, Doris Chen, Christina Lorenz, Renée Schroeder

published 11 Feb 2010

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A Second Actin-Like MamK Protein in Magnetospirillum magneticum AMB-1 Encoded Outside the Genomic Magnetosome Island

Jean-Baptiste Rioux, Nadège Philippe, Sandrine Pereira, David Pignol, Long-Fei Wu, Nicolas Ginet

published 10 Feb 2010

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Intravaginal Practices, Vaginal Infections and HIV Acquisition: Systematic Review and Meta-Analysis

Adriane Martin Hilber, Suzanna C. Francis, Matthew Chersich, Pippa Scott, Shelagh Redmond, Nicole Bender, Paolo Miotti, Marleen Temmerman, Nicola Low

published 09 Feb 2010

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