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Database and informatics methods

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays

Jennifer G. Mulle, Viren C. Patel, Stephen T. Warren, Madhuri R. Hegde, David J. Cutler, Michael E. Zwick

published 29 Mar 2010

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Transcription of Human Resistin Gene Involves an Interaction of Sp1 with Peroxisome Proliferator-Activating Receptor Gamma (PPARγ)

Anil K. Singh, Aruna Battu, Krishnaveni Mohareer, Seyed E. Hasnain, Nasreen Z. Ehtesham

published 29 Mar 2010

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Arabidopsis thaliana GYRB3 Does Not Encode a DNA Gyrase Subunit

Katherine M. Evans-Roberts, Christian Breuer, Melisa K. Wall, Keiko Sugimoto-Shirasu, Anthony Maxwell

published 26 Mar 2010

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A Systems Biology Approach to Transcription Factor Binding Site Prediction

Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano

published 26 Mar 2010

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Oligomeric Interfaces Under the Lens: Gemini

Giovanni Feverati, Claire Lesieur

published 25 Mar 2010

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Discovery of Phytophthora infestans Genes Expressed in Planta through Mining of cDNA Libraries

Roberto Sierra, Luis M. Rodríguez-R, Diego Chaves, Andrés Pinzón, Alejandro Grajales, Alejandro Rojas, Gabriel Mutis, Martha Cárdenas, Daniel Burbano, Pedro Jiménez, Adriana Bernal, Silvia Restrepo

published 24 Mar 2010

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4E10-Resistant HIV-1 Isolated from Four Subjects with Rare Membrane-Proximal External Region Polymorphisms

Kyle J. Nakamura, Johannes S. Gach, Laura Jones, Katherine Semrau, Jan Walter, Frederic Bibollet-Ruche, Julie M. Decker, Laura Heath, William D. Decker, Moses Sinkala, Chipepo Kankasa, Donald Thea, James Mullins, Louise Kuhn, Michael B. Zwick, Grace M. Aldrovandi

published 23 Mar 2010

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Dinucleotide Weight Matrices for Predicting Transcription Factor Binding Sites: Generalizing the Position Weight Matrix

Rahul Siddharthan

published 22 Mar 2010

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NSs Encoded by Groundnut Bud Necrosis Virus Is a Bifunctional Enzyme

Bhushan Lokesh, Panigrahi R. Rashmi, Bhat S. Amruta, Dharmaiah Srisathiyanarayanan, Mathur R. N. Murthy, Handanahal S. Savithri

published 18 Mar 2010

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FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia

published 18 Mar 2010

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Evolutionary Constraints Acting on DDX3X Protein Potentially Interferes with Rev-Mediated Nuclear Export of HIV-1 RNA

Deepak Sharma, Jayanta Bhattacharya

published 15 Mar 2010

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Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing

Chad J. Creighton, Ashley L. Benham, Huifeng Zhu, Mahjabeen F. Khan, Jeffrey G. Reid, Ankur K. Nagaraja, Michael D. Fountain Jr, Olivia Dziadek, Derek Han, Lang Ma, Jong Kim, Shannon M. Hawkins, Matthew L. Anderson, Martin M. Matzuk, Preethi H. Gunaratne

published 10 Mar 2010

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An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

published 10 Mar 2010

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