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Database and informatics methods

Co-Conserved Features Associated with cis Regulation of ErbB Tyrosine Kinases

Amar Mirza, Morad Mustafa, Eric Talevich, Natarajan Kannan

published 13 Dec 2010

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Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge

published 13 Dec 2010

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FReD: The Floral Reflectance Database — A Web Portal for Analyses of Flower Colour

Sarah E. J. Arnold, Samia Faruq, Vincent Savolainen, Peter W. McOwan, Lars Chittka

published 10 Dec 2010

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Molecular Evolution and Functional Divergence of the Cytochrome P450 3 (CYP3) Family in Actinopterygii (Ray-Finned Fish)

Jun Yan, Zhonghua Cai

published 10 Dec 2010

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Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

Atsushi Ebihara, Joel H. Nitta, Motomi Ito

published 08 Dec 2010

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Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Ping Gong, Mehdi Pirooznia, Xin Guan, Edward J. Perkins

published 08 Dec 2010

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De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, Antoine Sanou, Alphonse Traoré, Kenneth D. Vernick, N'Fale Sagnon, Brian P. Lazzaro

published 02 Dec 2010

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Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

Michal Mokry, Pantelis Hatzis, Ewart de Bruijn, Jan Koster, Rogier Versteeg, Jurian Schuijers, Marc van de Wetering, Victor Guryev, Hans Clevers, Edwin Cuppen

published 30 Nov 2010

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Identification, Activity and Disulfide Connectivity of C-di-GMP Regulating Proteins in Mycobacterium tuberculosis

Kajal Gupta, Prasun Kumar, Dipankar Chatterji

published 30 Nov 2010

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Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

Evandro Ferrada, Andreas Wagner

published 30 Nov 2010

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Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis

Charles W. Pemble IV, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard E. Lee, Stephen W. White

published 30 Nov 2010

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Reconstructing Mammalian Phylogenies: A Detailed Comparison of the Cytochrome b and Cytochrome Oxidase Subunit I Mitochondrial Genes

Shanan S. Tobe, Andrew C. Kitchener, Adrian M. T. Linacre

published 30 Nov 2010

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Symmetric Key Structural Residues in Symmetric Proteins with Beta-Trefoil Fold

Jianhui Feng, Mingfeng Li, Yanzhao Huang, Yi Xiao

published 30 Nov 2010

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