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Database and informatics methods

TogoDoc Server/Client System: Smart Recommendation and Efficient Management of Life Science Literature

Wataru Iwasaki, Yasunori Yamamoto, Toshihisa Takagi

The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

Zheng Zhang, Yuxiao Wang, Lushan Wang, Peiji Gao

Co-Conserved Features Associated with cis Regulation of ErbB Tyrosine Kinases

Amar Mirza, Morad Mustafa, Eric Talevich, Natarajan Kannan

Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, [ ... ], Olivier Lichtarge

FReD: The Floral Reflectance Database — A Web Portal for Analyses of Flower Colour

Sarah E. J. Arnold, Samia Faruq, [ ... ], Lars Chittka

Molecular Evolution and Functional Divergence of the Cytochrome P450 3 (CYP3) Family in Actinopterygii (Ray-Finned Fish)

Jun Yan, Zhonghua Cai

Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

Atsushi Ebihara, Joel H. Nitta, Motomi Ito

Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Ping Gong, Mehdi Pirooznia, Xin Guan, Edward J. Perkins

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, [ ... ], Brian P. Lazzaro

Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

Michal Mokry, Pantelis Hatzis, [ ... ], Edwin Cuppen

Identification, Activity and Disulfide Connectivity of C-di-GMP Regulating Proteins in Mycobacterium tuberculosis

Kajal Gupta, Prasun Kumar, Dipankar Chatterji

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

Evandro Ferrada, Andreas Wagner

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis

Charles W. Pemble IV, Perdeep K. Mehta, [ ... ], Stephen W. White

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