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Database and informatics methods

Complex Evolutionary History of the Aeromonas veronii Group Revealed by Host Interaction and DNA Sequence Data

Adam C. Silver, David Williams, Joshua Faucher, Amy J. Horneman, J. Peter Gogarten, Joerg Graf

published 16 Feb 2011

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An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, Leping Li, Gordon Robertson, Xuekui Zhang, Raphael Gottardo

published 16 Feb 2011

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Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

published 16 Feb 2011

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Error and Error Mitigation in Low-Coverage Genome Assemblies

Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel

published 14 Feb 2011

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Identification of Clinically Relevant Protein Targets in Prostate Cancer with 2D-DIGE Coupled Mass Spectrometry and Systems Biology Network Platform

Ramesh Ummanni, Frederike Mundt, Heike Pospisil, Simone Venz, Christian Scharf, Christine Barett, Maria Fälth, Jens Köllermann, Reinhard Walther, Thorsten Schlomm, Guido Sauter, Carsten Bokemeyer, Holger Sültmann, A. Schuppert, Tim H. Brümmendorf, Stefan Balabanov

published 11 Feb 2011

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Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

Mark A. Buchheim, Alexander Keller, Christian Koetschan, Frank Förster, Benjamin Merget, Matthias Wolf

published 10 Feb 2011

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The Expansion of the PRAME Gene Family in Eutheria

Ti-Cheng Chang, Yang Yang, Hiroshi Yasue, Arvind K. Bharti, Ernest F. Retzel, Wan-Sheng Liu

published 10 Feb 2011

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The PE-PPE Domain in Mycobacterium Reveals a Serine α/β Hydrolase Fold and Function: An In-Silico Analysis

Rafiya Sultana, Karunakar Tanneeru, Lalitha Guruprasad

published 10 Feb 2011

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Connecting Peptide Physicochemical and Antimicrobial Properties by a Rational Prediction Model

Marc Torrent, David Andreu, Victòria M. Nogués, Ester Boix

published 09 Feb 2011

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Functional Analysis of an Acid Adaptive DNA Adenine Methyltransferase from Helicobacter pylori 26695

Arun Banerjee, Desirazu N. Rao

published 09 Feb 2011

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HIV-1 Nef Protein Structures Associated with Brain Infection and Dementia Pathogenesis

Susanna L. Lamers, Art F. Y. Poon, Michael S. McGrath

published 09 Feb 2011

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Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Anna Kiialainen, Olof Karlberg, Annika Ahlford, Snaevar Sigurdsson, Kerstin Lindblad-Toh, Ann-Christine Syvänen

published 09 Feb 2011

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Further Characterisation of the Translational Termination-Reinitiation Signal of the Influenza B Virus Segment 7 RNA

Michael L. Powell, Kendra E. Leigh, Tuija A. A. Pöyry, Richard J. Jackson, T. David K. Brown, Ian Brierley

published 08 Feb 2011

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