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Database and informatics methods

YY1-Binding Sites Provide Central Switch Functions in the PARP-1 Gene Expression Network

Martina Doetsch, Angela Gluch, Goran Poznanović, Juergen Bode, Melita Vidaković

published 28 Aug 2012

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Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

Bi-Qing Li, Kai-Yan Feng, Lei Chen, Tao Huang, Yu-Dong Cai

published 28 Aug 2012

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Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites

Natsumi Kanzaki, Robin M. Giblin-Davis, Rudolf H. Scheffrahn, Hisatomo Taki, Alejandro Esquivel, Kerrie A. Davies, E. Allen Herre

published 28 Aug 2012

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Deep Insight into the Ganoderma lucidum by Comprehensive Analysis of Its Transcriptome

Guo-Jun Yu, Man Wang, Jie Huang, Ya-Lin Yin, Yi-Jie Chen, Shuai Jiang, Yan-Xia Jin, Xian-Qing Lan, Barry Hon Cheung Wong, Yi Liang, Hui Sun

published 27 Aug 2012

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Frequency Matrix Approach Demonstrates High Sequence Quality in Avian BARCODEs and Highlights Cryptic Pseudogenes

Mark Y. Stoeckle, Kevin C. R. Kerr

published 27 Aug 2012

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Molecular Evolutionary Analysis of pH1N1 2009 Influenza Virus in Reunion Island, South West Indian Ocean Region: A Cohort Study

Hervé Pascalis, Sarah Temmam, David A. Wilkinson, Najla Dsouli, Magali Turpin, Xavier de Lamballerie, Koussay Dellagi

published 27 Aug 2012

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Conic Sampling: An Efficient Method for Solving Linear and Quadratic Programming by Randomly Linking Constraints within the Interior

Oliver Serang

published 27 Aug 2012

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29 Mammalian Genomes Reveal Novel Exaptations of Mobile Elements for Likely Regulatory Functions in the Human Genome

Craig B. Lowe, David Haussler

published 27 Aug 2012

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Increasing Coverage of Transcription Factor Position Weight Matrices through Domain-level Homology

Brady Bernard, Vesteinn Thorsson, Hector Rovira, Ilya Shmulevich

published 27 Aug 2012

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A Skeletal Muscle Ryanodine Receptor Interaction Domain in Triadin

Elize Wium, Angela F. Dulhunty, Nicole A. Beard

published 24 Aug 2012

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A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8

Akiko Nakanishi, Naoki Kobayashi, Asuka Suzuki-Hirano, Hidenori Nishihara, Takeshi Sasaki, Mika Hirakawa, Kenta Sumiyama, Tomomi Shimogori, Norihiro Okada

published 24 Aug 2012

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Local-Based Semantic Navigation on a Networked Representation of Information

José A. Capitán, Javier Borge-Holthoefer, Sergio Gómez, Juan Martinez-Romo, Lourdes Araujo, José A. Cuesta, Alex Arenas

published 24 Aug 2012

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Pitfalls of Establishing DNA Barcoding Systems in Protists: The Cryptophyceae as a Test Case

Kerstin Hoef-Emden

published 24 Aug 2012

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