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Database and informatics methods

Characterization of an AGAMOUS-like MADS Box Protein, a Probable Constituent of Flowering and Fruit Ripening Regulatory System in Banana

Swarup Roy Choudhury, Sujit Roy, Anish Nag, Sanjay Kumar Singh, Dibyendu N. Sengupta

published 11 Sep 2012

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Can We Depend on Investigators to Identify and Register Randomized Controlled Trials?

Roberta W. Scherer, Pamela C. Sieving, Ann-Margret Ervin, Kay Dickersin

published 11 Sep 2012

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Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein

Abhinav Kumar, Sabine Möcklinghoff, Fumiaki Yumoto, Lukasz Jaroszewski, Carol L. Farr, Anna Grzechnik, Phuong Nguyen, Christian X. Weichenberger, Hsiu-Ju Chiu, Heath E. Klock, Marc-André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Bruce R. Conklin, Robert J. Fletterick, Ian A. Wilson

published 11 Sep 2012

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Statistical Approaches to Use a Model Organism for Regulatory Sequences Annotation of Newly Sequenced Species

Pietro Liò, Claudia Angelini, Italia De Feis, Viet-Anh Nguyen

published 11 Sep 2012

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Diversity and Complexity in Chromatin Recognition by TFII-I Transcription Factors in Pluripotent Embryonic Stem Cells and Embryonic Tissues

Aleksandr V. Makeyev, Badam Enkhmandakh, Seung-Hyun Hong, Pujan Joshi, Dong-Guk Shin, Dashzeveg Bayarsaihan

published 10 Sep 2012

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A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Thessika Hialla Almeida Araujo, Leandro Inacio Souza-Brito, Pieter Libin, Koen Deforche, Dustin Edwards, Antonio Eduardo de Albuquerque-Junior, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Luiz Carlos Junior Alcantara

published 10 Sep 2012

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Identification of BRCA1/2 Founder Mutations in Southern Chinese Breast Cancer Patients Using Gene Sequencing and High Resolution DNA Melting Analysis

Ava Kwong, Enders Kai On Ng, Chris Lei Po Wong, Fian Bic Fai Law, Tommy Au, Hong Nei Wong, Allison W. Kurian, Dee W. West, James M. Ford, Edmond Siu Kwan Ma

published 07 Sep 2012

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Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

Charles K. Lee, Craig W. Herbold, Shawn W. Polson, K. Eric Wommack, Shannon J. Williamson, Ian R. McDonald, S. Craig Cary

published 06 Sep 2012

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Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

Emily S. Charlson, Kyle Bittinger, Jun Chen, Joshua M. Diamond, Hongzhe Li, Ronald G. Collman, Frederic D. Bushman

published 06 Sep 2012

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Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders

Wanhe Li, Ying Jin, Lisa Prazak, Molly Hammell, Josh Dubnau

published 05 Sep 2012

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Protein Disorder and Short Conserved Motifs in Disordered Regions Are Enriched near the Cytoplasmic Side of Single-Pass Transmembrane Proteins

Ilias Stavropoulos, Nora Khaldi, Norman E. Davey, Kevin O’Brien, Finian Martin, Denis C. Shields

published 04 Sep 2012

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Identification and Sequence Analysis of Metazoan tRNA 3′-End Processing Enzymes tRNase Zs

Zhikang Wang, Jia Zheng, Xiaojie Zhang, Jingjing Peng, Jinyu Liu, Ying Huang

published 04 Sep 2012

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Rapid Identification of Cell-Specific, Internalizing RNA Aptamers with Bioinformatics Analyses of a Cell-Based Aptamer Selection

William H. Thiel, Thomas Bair, Andrew S. Peek, Xiuying Liu, Justin Dassie, Katie R. Stockdale, Mark A. Behlke, Francis J. Miller Jr, Paloma H. Giangrande

published 04 Sep 2012

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