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Database and informatics methods

An FD-LC-MS/MS Proteomic Strategy for Revealing Cellular Protein Networks: A Conditional Superoxide Dismutase 1 Knockout Cells

Tomoko Ichibangase, Yasuhiro Sugawara, [ ... ], Kazuhiro Imai

Zinc Finger Binding Motifs Do Not Explain Recombination Rate Variation within or between Species of Drosophila

Caiti S. S. Heil, Mohamed A. F. Noor

Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics

Alessandro Coppe, Stefania Bortoluzzi, [ ... ], Chiara Papetti

Evaluating Caveolin Interactions: Do Proteins Interact with the Caveolin Scaffolding Domain through a Widespread Aromatic Residue-Rich Motif?

Dominic P. Byrne, Caroline Dart, Daniel J. Rigden

“Seed-Milarity” Confers to hsa-miR-210 and hsa-miR-147b Similar Functional Activity

Thomas Bertero, Sébastien Grosso, [ ... ], Bernard Mari

Computational Prediction of Polycomb-Associated Long Non-Coding RNAs

Galina V. Glazko, Boris L. Zybailov, Igor B. Rogozin

MyDas, an Extensible Java DAS Server

Gustavo A. Salazar, Leyla J. García, [ ... ], Henning Hermjakob

PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Stéphane Mahé, Marie Duhamel, [ ... ], Philippe Vandenkoornhuyse

Manipulating Fatty Acid Biosynthesis in Microalgae for Biofuel through Protein-Protein Interactions

Jillian L. Blatti, Joris Beld, [ ... ], Michael D. Burkart

Proteomic and Systems Biology Analysis of Monocytes Exposed to Securinine, a GABA_A Receptor Antagonist and Immune Adjuvant

Matt Shipman, Kirk Lubick, [ ... ], Edward A. Dratz

Deep Sequencing of the Transcriptomes of Soybean Aphid and Associated Endosymbionts

Sijun Liu, Nanasaheb P. Chougule, Diveena Vijayendran, Bryony C. Bonning

Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes

Robert M. Brucker, Lisa J. Funkhouser, [ ... ], Seth R. Bordenstein

Identification of Drug Resistant Mutations in HIV-1 CRF07_BC Variants Selected by Nevirapine In Vitro

Hao Wu, Hao-Jie Zhang, [ ... ], Bo-Jian Zheng

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