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Database and informatics methods

MK4MDD: A Multi-Level Knowledge Base and Analysis Platform for Major Depressive Disorder

Liyuan Guo, Weina Zhang, Suhua Chang, Liuyan Zhang, Jurg Ott, Jing Wang

published 05 Oct 2012

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Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

published 04 Oct 2012

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Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer

Ruth Perets, Tommy Kaplan, Ilan Stein, Guy Hidas, Shay Tayeb, Eti Avraham, Yinon Ben-Neriah, Itamar Simon, Eli Pikarsky

published 04 Oct 2012

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Disordered Binding Regions and Linear Motifs—Bridging the Gap between Two Models of Molecular Recognition

Bálint Mészáros, Zsuzsanna Dosztányi, István Simon

published 03 Oct 2012

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GenoSets: Visual Analytic Methods for Comparative Genomics

Aurora A. Cain, Robert Kosara, Cynthia J. Gibas

published 03 Oct 2012

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A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang, Lingling An, Simon M. Lin, Gang Feng, Yuqing Qiu

published 01 Oct 2012

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Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

Bin Liu, Xiaolong Wang, Qingcai Chen, Qiwen Dong, Xun Lan

published 28 Sep 2012

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Assessment of Algorithms for Inferring Positional Weight Matrix Motifs of Transcription Factor Binding Sites Using Protein Binding Microarray Data

Yaron Orenstein, Chaim Linhart, Ron Shamir

published 28 Sep 2012

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De Novo Foliar Transcriptome of Chenopodium amaranticolor and Analysis of Its Gene Expression During Virus-Induced Hypersensitive Response

Yongqiang Zhang, Xinwu Pei, Chao Zhang, Zifeng Lu, Zhixing Wang, Shirong Jia, Weimin Li

published 28 Sep 2012

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Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction

Wei Song Hwang, Christiane Weirauch

published 28 Sep 2012

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Copy Number Variation in Subjects with Major Depressive Disorder Who Attempted Suicide

Roy H. Perlis, Douglas Ruderfer, Steven P. Hamilton, Carl Ernst

published 27 Sep 2012

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Comparative proteome analysis of Milnesium tardigradum in early embryonic state versus adults in active and anhydrobiotic state

Elham Schokraie, Uwe Warnken, Agnes Hotz-Wagenblatt, Markus A. Grohme, Steffen Hengherr, Frank Förster, Ralph O. Schill, Marcus Frohme, Thomas Dandekar, Martina Schnölzer

published 27 Sep 2012

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Comparing Molecular Variation to Morphological Species Designations in the Deep-Sea Coral Narella Reveals New Insights into Seamount Coral Ranges

Amy R. Baco, Stephen D. Cairns

published 27 Sep 2012

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