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Database and informatics methods

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Neeraja M. Krishnan, Prakhar Gaur, Rakshit Chaudhary, Arjun A. Rao, Binay Panda

published 22 Oct 2012

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Probing the Putative Active Site of YjdL: An Unusual Proton-Coupled Oligopeptide Transporter from E. coli

Johanne Mørch Jensen, Fouzia Ismat, Gerda Szakonyi, Moazur Rahman, Osman Mirza

published 22 Oct 2012

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Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs

Xiaowei Zhao, Wenyi Zhang, Xin Xu, Zhiqiang Ma, Minghao Yin

published 22 Oct 2012

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Tat–Dependent Translocation of an F₄₂₀–Binding Protein of Mycobacterium tuberculosis

Ghader Bashiri, Ellen F. Perkowski, Adrian P. Turner, Meghan E. Feltcher, Miriam Braunstein, Edward N. Baker

published 22 Oct 2012

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miRandola: Extracellular Circulating MicroRNAs Database

Francesco Russo, Sebastiano Di Bella, Giovanni Nigita, Valentina Macca, Alessandro Laganà, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro

published 19 Oct 2012

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ExpI and PhzI Are Descendants of the Long Lost Cognate Signal Synthase for SdiA

Anice Sabag-Daigle, Brian M. M. Ahmer

published 17 Oct 2012

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MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Weineng Chen, Hua Chen, Daniel R. Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Peer Bork

published 17 Oct 2012

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Analysis of Intron Sequence Features Associated with Transcriptional Regulation in Human Genes

Huimin Li, Dan Chen, Jing Zhang

published 17 Oct 2012

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Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Brachypodium distachyon

Lihong Chen, Wei Hu, Shenglong Tan, Min Wang, Zhanbing Ma, Shiyi Zhou, Xiaomin Deng, Yang Zhang, Chao Huang, Guangxiao Yang, Guangyuan He

published 17 Oct 2012

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The Shape of the Urine Stream — From Biophysics to Diagnostics

Andrew P. S. Wheeler, Samir Morad, Noor Buchholz, Martin M. Knight

published 16 Oct 2012

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Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

published 16 Oct 2012

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De Novo Assembly, Characterization and Functional Annotation of Pineapple Fruit Transcriptome through Massively Parallel Sequencing

Wen Dee Ong, Lok-Yung Christopher Voo, Vijay Subbiah Kumar

published 16 Oct 2012

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Tick-Box for 3′-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila

Matteo Montagna, Davide Sassera, Francesca Griggio, Sara Epis, Claudio Bandi, Carmela Gissi

published 15 Oct 2012

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