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Database and informatics methods

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Neeraja M. Krishnan, Prakhar Gaur, [ ... ], Binay Panda

Probing the Putative Active Site of YjdL: An Unusual Proton-Coupled Oligopeptide Transporter from E. coli

Johanne Mørch Jensen, Fouzia Ismat, [ ... ], Osman Mirza

Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs

Xiaowei Zhao, Wenyi Zhang, [ ... ], Minghao Yin

Tat–Dependent Translocation of an F₄₂₀–Binding Protein of Mycobacterium tuberculosis

Ghader Bashiri, Ellen F. Perkowski, [ ... ], Edward N. Baker

miRandola: Extracellular Circulating MicroRNAs Database

Francesco Russo, Sebastiano Di Bella, [ ... ], Alfredo Ferro

ExpI and PhzI Are Descendants of the Long Lost Cognate Signal Synthase for SdiA

Anice Sabag-Daigle, Brian M. M. Ahmer

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

Analysis of Intron Sequence Features Associated with Transcriptional Regulation in Human Genes

Huimin Li, Dan Chen, Jing Zhang

Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Brachypodium distachyon

Lihong Chen, Wei Hu, [ ... ], Guangyuan He

The Shape of the Urine Stream — From Biophysics to Diagnostics

Andrew P. S. Wheeler, Samir Morad, Noor Buchholz, Martin M. Knight

Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

De Novo Assembly, Characterization and Functional Annotation of Pineapple Fruit Transcriptome through Massively Parallel Sequencing

Wen Dee Ong, Lok-Yung Christopher Voo, Vijay Subbiah Kumar

Tick-Box for 3′-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila

Matteo Montagna, Davide Sassera, [ ... ], Carmela Gissi

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