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Database and informatics methods

De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids

Ramasamy S. Annadurai, Ramprasad Neethiraj, Vasanthan Jayakumar, Anand C. Damodaran, Sudha Narayana Rao, Mohan A. V. S. K. Katta, Sreeja Gopinathan, Santosh Prasad Sarma, Vanitha Senthilkumar, Vidya Niranjan, Ashok Gopinath, Raja C. Mugasimangalam

published 28 Feb 2013

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The Internal Transcribed Spacer (ITS) Region and trnhH-psbA Are Suitable Candidate Loci for DNA Barcoding of Tropical Tree Species of India

Abhinandan Mani Tripathi, Antariksh Tyagi, Anoop Kumar, Akanksha Singh, Shivani Singh, Lal Babu Chaudhary, Sribash Roy

published 27 Feb 2013

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Resampling Nucleotide Sequences with Closest-Neighbor Trimming and Its Comparison to Other Methods

Kouki Yonezawa, Manabu Igarashi, Keisuke Ueno, Ayato Takada, Kimihito Ito

published 27 Feb 2013

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Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses

Fredrik Granberg, Marina Vicente-Rubiano, Consuelo Rubio-Guerri, Oskar E. Karlsson, Deborah Kukielka, Sándor Belák, José Manuel Sánchez-Vizcaíno

published 27 Feb 2013

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Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts

Valer Gotea, Hanna M. Petrykowska, Laura Elnitski

published 27 Feb 2013

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Preferential Duplication of Intermodular Hub Genes: An Evolutionary Signature in Eukaryotes Genome Networks

Ricardo M. Ferreira, José Luiz Rybarczyk-Filho, Rodrigo J. S. Dalmolin, Mauro A. A. Castro, José C. F. Moreira, Leonardo G. Brunnet, Rita M. C. de Almeida

published 26 Feb 2013

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The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms

Ruth Y. Eberhardt, S. Josefin Bartholdson, Marco Punta, Alex Bateman

published 25 Feb 2013

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Study of USH1 Splicing Variants through Minigenes and Transcript Analysis from Nasal Epithelial Cells

María José Aparisi, Gema García-García, Elena Aller, María Dolores Sequedo, Cristina Martínez-Fernández de la Cámara, Regina Rodrigo, Miguel Armengot, Julio Cortijo, Javier Milara, Manuel Díaz-LLopis, Teresa Jaijo, José María Millán

published 25 Feb 2013

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Non-LTR R2 Element Evolutionary Patterns: Phylogenetic Incongruences, Rapid Radiation and the Maintenance of Multiple Lineages

Andrea Luchetti, Barbara Mantovani

published 25 Feb 2013

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The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study

Daniel A. Dalquen, Adrian M. Altenhoff, Gaston H. Gonnet, Christophe Dessimoz

published 25 Feb 2013

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Biochemical and Mutational Analysis of a Novel Nicotinamidase from Oceanobacillus iheyensis HTE831

Guiomar Sánchez-Carrón, María Inmaculada García-García, Rubén Zapata-Pérez, Hideto Takami, Francisco García-Carmona, Álvaro Sánchez-Ferrer

published 25 Feb 2013

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Comparative Genomics Identifies the Mouse Bmp3 Promoter and an Upstream Evolutionary Conserved Region (ECR) in Mammals

Jonathan W. Lowery, Anna W. LaVigne, Shoichiro Kokabu, Vicki Rosen

published 22 Feb 2013

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Identification of a Small Molecule That Selectively Inhibits Mouse PC2 over Mouse PC1/3: A Computational and Experimental Study

Austin B. Yongye, Mirella Vivoli, Iris Lindberg, Jon R. Appel, Richard A. Houghten, Karina Martinez-Mayorga

published 22 Feb 2013

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