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Database and informatics methods

A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)

Christopher M. Seabury, Scot E. Dowd, Paul M. Seabury, Terje Raudsepp, Donald J. Brightsmith, Poul Liboriussen, Yvette Halley, Colleen A. Fisher, Elaine Owens, Ganesh Viswanathan, Ian R. Tizard

published 08 May 2013

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Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40

Myco Umemura, Yoshinori Koyama, Itaru Takeda, Hiroko Hagiwara, Tsutomu Ikegami, Hideaki Koike, Masayuki Machida

published 07 May 2013

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Protein Clustering and RNA Phylogenetic Reconstruction of the Influenza a Virus NS1 Protein Allow an Update in Classification and Identification of Motif Conservation

Edgar E. Sevilla-Reyes, David A. Chavaro-Pérez, Elvira Piten-Isidro, Luis H. Gutiérrez-González, Teresa Santos-Mendoza

published 07 May 2013

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Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain

Brian O'Farrell, John A. H. Benzie, Phil McGinnity, Elvira de Eyto, Eileen Dillane, James Coughlan, Tom F. Cross

published 07 May 2013

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The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships

Torsten H. Struck

published 07 May 2013

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Neutralizing Antibodies in Patients with Chronic Hepatitis C, Genotype 1, against a Panel of Genotype 1 Culture Viruses: Lack of Correlation to Treatment Outcome

Jannie Pedersen, Tanja B. Jensen, Thomas H. R. Carlsen, Kristian Schønning, Peer Brehm Christensen, Alex Lund Laursen, Henrik Krarup, Jens Bukh, Nina Weis

published 07 May 2013

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Two-Gene Phylogeny of Bright-Spored Myxomycetes (Slime Moulds, Superorder Lucisporidia)

Anna Maria Fiore-Donno, Fionn Clissmann, Marianne Meyer, Martin Schnittler, Thomas Cavalier-Smith

published 07 May 2013

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The PARIGA Server for Real Time Filtering and Analysis of Reciprocal BLAST Results

Massimiliano Orsini, Simone Carcangiu, Gianmauro Cuccuru, Paolo Uva, Anna Tramontano

published 07 May 2013

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LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics

Joseph M. Foster, Pablo Moreno, Antonio Fabregat, Henning Hermjakob, Christoph Steinbeck, Rolf Apweiler, Michael J. O. Wakelam, Juan Antonio Vizcaíno

published 07 May 2013

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Large-Scale Modelling of the Divergent Spectrin Repeats in Nesprins: Giant Modular Proteins

Flavia Autore, Mark Pfuhl, Xueping Quan, Aisling Williams, Roland G. Roberts, Catherine M. Shanahan, Franca Fraternali

published 06 May 2013

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Dicoogle, a Pacs Featuring Profiled Content Based Image Retrieval

Frederico Valente, Carlos Costa, Augusto Silva

published 06 May 2013

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Developmental Gene Discovery in a Hemimetabolous Insect: De Novo Assembly and Annotation of a Transcriptome for the Cricket Gryllus bimaculatus

Victor Zeng, Ben Ewen-Campen, Hadley W. Horch, Siegfried Roth, Taro Mito, Cassandra G. Extavour

published 06 May 2013

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No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

Katarzyna Zaremba-Niedźwiedzka, Siv G. E. Andersson

published 03 May 2013

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