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Database and informatics methods

A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)

Christopher M. Seabury, Scot E. Dowd, [ ... ], Ian R. Tizard

Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40

Myco Umemura, Yoshinori Koyama, [ ... ], Masayuki Machida

Protein Clustering and RNA Phylogenetic Reconstruction of the Influenza a Virus NS1 Protein Allow an Update in Classification and Identification of Motif Conservation

Edgar E. Sevilla-Reyes, David A. Chavaro-Pérez, [ ... ], Teresa Santos-Mendoza

Selection and Phylogenetics of Salmonid MHC Class I: Wild Brown Trout (Salmo trutta) Differ from a Non-Native Introduced Strain

Brian O'Farrell, John A. H. Benzie, [ ... ], Tom F. Cross

The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships

Torsten H. Struck

Neutralizing Antibodies in Patients with Chronic Hepatitis C, Genotype 1, against a Panel of Genotype 1 Culture Viruses: Lack of Correlation to Treatment Outcome

Jannie Pedersen, Tanja B. Jensen, [ ... ], Nina Weis

Two-Gene Phylogeny of Bright-Spored Myxomycetes (Slime Moulds, Superorder Lucisporidia)

Anna Maria Fiore-Donno, Fionn Clissmann, [ ... ], Thomas Cavalier-Smith

The PARIGA Server for Real Time Filtering and Analysis of Reciprocal BLAST Results

Massimiliano Orsini, Simone Carcangiu, [ ... ], Anna Tramontano

LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics

Joseph M. Foster, Pablo Moreno, [ ... ], Juan Antonio Vizcaíno

Large-Scale Modelling of the Divergent Spectrin Repeats in Nesprins: Giant Modular Proteins

Flavia Autore, Mark Pfuhl, [ ... ], Franca Fraternali

Dicoogle, a Pacs Featuring Profiled Content Based Image Retrieval

Frederico Valente, Carlos Costa, Augusto Silva

Developmental Gene Discovery in a Hemimetabolous Insect: De Novo Assembly and Annotation of a Transcriptome for the Cricket Gryllus bimaculatus

Victor Zeng, Ben Ewen-Campen, [ ... ], Cassandra G. Extavour

No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

Katarzyna Zaremba-Niedźwiedzka, Siv G. E. Andersson

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