Advertisement

Browse Subject Areas

?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

Biophysical simulations

Structural characterization of EGFR exon 19 deletion mutation using molecular dynamics simulation

Mahlet Z. Tamirat, Marika Koivu, Klaus Elenius, Mark S. Johnson

StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes

Timo R. Maarleveld, Brett G. Olivier, Frank J. Bruggeman

Automatic Identification of Mobile and Rigid Substructures in Molecular Dynamics Simulations and Fractional Structural Fluctuation Analysis

Leandro Martínez

Modeling and simulation of biological systems using SPICE language

Morgan Madec, Christophe Lallement, Jacques Haiech

Structure, function and dynamics in acyl carrier proteins

Rohit Farmer, Christopher Morton Thomas, Peter James Winn

Steered Molecular Dynamics Simulations Reveal the Likelier Dissociation Pathway of Imatinib from Its Targeting Kinases c-Kit and Abl

Li-Jun Yang, Jun Zou, [ ... ], Sheng-Yong Yang

Identifying Ligand Binding Conformations of the β2-Adrenergic Receptor by Using Its Agonists as Computational Probes

Basak Isin, Guillermina Estiu, Olaf Wiest, Zoltán N. Oltvai

The Mechanism of Allosteric Inhibition of Protein Tyrosine Phosphatase 1B

Shuai Li, Jingmiao Zhang, [ ... ], Jian Zhang

Accelerating the Gillespie Exact Stochastic Simulation Algorithm Using Hybrid Parallel Execution on Graphics Processing Units

Ivan Komarov, Roshan M. D'Souza

Stochastic Modeling for the Expression of a Gene Regulated by Competing Transcription Factors

Hsih-Te Yang, Minoru S. H. Ko

Molecular Dynamics Simulation Study of Conformational Changes of Transcription Factor TFIIS during RNA Polymerase II Transcriptional Arrest and Reactivation

Changsun Eun, Juan Manuel Ortiz-Sánchez, [ ... ], J. Andrew McCammon

Investigation of the Acetylation Mechanism by GCN5 Histone Acetyltransferase

Junfeng Jiang, Junyan Lu, [ ... ], Cheng Luo

Molecular Insight into the Steric Shielding Effect of PEG on the Conjugated Staphylokinase: Biochemical Characterization and Molecular Dynamics Simulation

Qimeng Mu, Tao Hu, Jingkai Yu

Advertisement

Create a weekly email alert for: Biophysical simulations

You can change these options by clicking profile then "Alerts and Notifications"