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Bioinformatics

Accurate quantification of spliced and unspliced transcripts for single-cell RNA sequencing with tidesurf

Jan T. Schleicher, Doreen Klingler, Manfred Claassen

published 17 Aug 2026

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Assessing fish diversity in the Amazon: The impact of primers and reference libraries in eDNA surveys

Shizuka Hashimoto, Sarah V. Carvalho, Sonny de S. C. Miranda, Valéria N. Machado, Lucélia N. Carvalho, Cláudia P. de Deus, Izeni P. Farias, Tomas Hrbek

published 13 Aug 2026

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F-squares over cellular automata

Joanne Hall, Kerri Morgan, Stella Stylianou, Vindya Warnakulasooriyage

published 12 Aug 2026

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Rapid and consistent genetic clustering of environmental Legionella pneumophila isolates using accessible single-step WGS analysis tools

Hanno Schmidt, Sven-Ernö Bikár, Bettina Lieb, Daniela Lotz, Tobias Brand, Moritz Brandstetter, Thomas Hankeln, André Michel, Bodo Plachter, Wolfgang Kohnen

published 11 Aug 2026

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A course-undergraduate research experience (CURE) to explore the effect of structural variants on gene expression in C. elegans balancers

Tatiana Maroilley, Victoria Rodrigues Alves Barbosa, Rumika Mascarenhas, Suzanne Ferris, Catherine Diao, Fatemah AlAwadhi, Saood Aldakheel, Ahmad Ali, Denah Alkanderi, Meshary Alshatti, Samyah Alsuwaileh, Ryan Bui, Bentley Chai, Lara Dsouza, Parisa Etemadi Nezhad, Emily Garcia-Volk, Zainub Haq, Sadeeb Hossain, Grace Johnson, Nidhi Kotikalapudi, Inara Lalani, Courtney Lenz, Taye Louie, Stephen Moore, Shubh Patel, Shuvam Prasai, Ronaar Qureshi, Farah Rahmani, Bilal Shakir, Sadhiya Siraj Ahamed, Hong Anh Tran, Radia Waziha, Cassandra M. Wood, Sara Zbinden, David Anderson, Maja Tarailo-Graovac

published 11 Aug 2026

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Bridging clinical and computational assessments: Standardizing kinematic reporting in modified mallet scale movements

Ali İmran Yalçın, Oğuz Faik Seven, Merve Sarıipek, Semra Topuz, Mehmet Arif Adli, Tüzün Fırat

published 10 Aug 2026

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ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

published 10 Aug 2026

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Efficient fine-tuning of large-scale vision-language models for visual marketing analysis: From brand logo detection to aesthetic preference prediction

Suxiang Qin, Songwen Wei

published 07 Aug 2026

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SEGUID v2: Extending SEGUID checksums for circular, linear, single- and double-stranded biological sequences

Humberto Pereira, Paulo César Silva, M. Wayne Davis, Louis Abraham, György Babnigg, Henrik Bengtsson, Björn Johansson

published 07 Aug 2026

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Structural analysis of recombinant AAV vector genomes at single-molecule resolution

David Rouleau, Dimpal Lata, Serena Dollive, Robert E. Bruccoleri, Laura Van Lieshout, Diane Golebiowski, Ifeyinwa Iwuchukwu

published 30 Jul 2026

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Evaluating the cultural alignment of multilingual LLMs in typical Japanese workplace scenarios

Zhiwei Gao, Nobuyuki Shimizu, Sumio Fujita, Shaowen Peng, Shoko Wakamiya, Eiji Aramaki

published 27 Jul 2026

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An approach of state-of-charge prediction for lithium-ion batteries using hybrid Pyraformer-LSTM learning network

Xianbin Wang, Liping Zhang, Qihua Fan, Yiyin Hu, Jian Zhang, Huimin Chen

published 24 Jul 2026

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Distinct gut and oral microbiome patterns associated with dyslexia in a family-based cohort: A preliminary exploratory study

Sterling L. Wright, Mia Joslin, Yookyung Kim, Magdalena Olson, Ayden Hall, Beate Peter, Corrie M. Whisner

published 21 Jul 2026

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