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Bioinformatics

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen, James J. Chou

Bats, Trypanosomes, and Triatomines in Ecuador: New Insights into the Diversity, Transmission, and Origins of Trypanosoma cruzi and Chagas Disease

C. Miguel Pinto, Sofía Ocaña-Mayorga, [ ... ], Susan L. Perkins

Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes

Thomas Rolland, Cécile Neuvéglise, Christine Sacerdot, Bernard Dujon

A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites

Tony Håndstad, Morten Beck Rye, Finn Drabløs, Pål Sætrom

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families

Lucas Bleicher, Ney Lemke, Richard Charles Garratt

Computational Prediction of Polycomb-Associated Long Non-Coding RNAs

Galina V. Glazko, Boris L. Zybailov, Igor B. Rogozin

In-Silico Analysis of Binding Site Features and Substrate Selectivity in Plant Flavonoid-3-O Glycosyltransferases (F3GT) through Molecular Modeling, Docking and Dynamics Simulation Studies

Ranu Sharma, Priyabrata Panigrahi, C.G. Suresh

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, [ ... ], Ramanathan Sowdhamini

Modulation of the honey bee queen microbiota: Effects of early social contact

J. Elijah Powell, Daren Eiri, Nancy A. Moran, Juliana Rangel

ASV vs OTUs clustering: Effects on alpha, beta, and gamma diversities in microbiome metabarcoding studies

Andrea Fasolo, Saptarathi Deb, [ ... ], Andrea Squartini

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates

Barbara Schrörs, Pablo Riesgo-Ferreiro, [ ... ], Ugur Sahin

The Global Trade in Fresh Produce and the Vagility of Plant Viruses: A Case Study in Garlic

Stephen J. Wylie, Hua Li, Muhammad Saqib, Michael G. K. Jones

Neural crest cell genes and the domestication syndrome: A comparative analysis of selection

Andrew O. Rubio, Kyle Summers

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